Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 192 5e-44 >seq2 Length=59803892 Score = 192 bits (212), Expect = 5e-44 Identities = 583/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 59230194 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 59230252 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || ||||||||||| || || |||||| | |||| || | | ||||||| Sbjct 59230253 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAA 59230312 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| |||||||| | ||||| | || || |||||||| || | Sbjct 59230313 ACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAG 59230372 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 |||| ||||| ||||| | ||||| ||| | | | || || || || | ||| Sbjct 59230373 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGATGTCCAGGTTGCCGAG 59230431 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 59230432 GCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 59230491 Query 61351 GTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | || | || ||||||||| ||| | | || || | | | ||||||| ||| || Sbjct 59230492 TTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAAT 59230550 Query 61410 CGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 ||||| || || | | |||| ||| ||| | |||||| | ||||||| | || Sbjct 59230551 TGAGACAATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGT 59230609 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | || || | ||| || ||| |||| ||||| || || || | || ||| Sbjct 59230610 ----CCGAAACCTTCGCTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTC 59230665 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||| || | || || |||||||| ||||| || | ||||| || | ||| Sbjct 59230666 AGCGGAAGCTTCTGTTCGATATTCTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACC 59230725 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 ||| |||||||| || ||| | ||||| || |||| ||||||||||| |||||| Sbjct 59230726 TTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTT 59230785 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 | || | | || || | | |||||||| || | | |||||| || Sbjct 59230786 TACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTGTTGCAGAT 59230842 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || || ||| ||| || || ||| ||| | || | || | || ||| Sbjct 59230843 GCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGAATG 59230902 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 ||| | | | ||| | || || || ||||| || ||| | |||||| | |||| Sbjct 59230903 AATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGGATGCTTTG 59230962 Query 61828 GG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCT 61886 || |||| | ||| || ||| | | || |||||||||| ||||| ||||| | Sbjct 59230963 GGTTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGTTT 59231021 Query 61887 GGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 59231022 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 59231066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567941855680