Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq273700 120 4e-25 seq215068 114 2e-23 seq277141 100 4e-19 seq219931 98.7 1e-18 seq203404 98.7 1e-18 seq154240 96.9 5e-18 seq10124 95.1 2e-17 seq270458 91.5 2e-16 seq201487 86.0 9e-15 seq99806 84.2 3e-14 seq115976 82.4 1e-13 seq69499 78.8 1e-12 >seq273700 Length=14585 Score = 120 bits (132), Expect = 4e-25 Identities = 173/243 (71%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| || |||||| ||||| | ||| || |||| Sbjct 13904 CCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGATCTTAC-GACTTTGCGGAGACC 13962 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 13963 TGTGTTTTTGGTAAACAGTCGCCCGATCCTGGTCACTACGACCCCCT------------- 14009 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||| ||||||||||||||||| |||||| ||| ||||| Sbjct 14010 TTGTG----AGGAG--GCACCCCTTGTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCT 14063 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | | | ||| ||||||||||||| |||||||||||||||| | Sbjct 14064 TAGAGAGAGTTGTCTTG-CCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 14122 Query 246 GTA 248 ||| Sbjct 14123 GTA 14125 >seq215068 Length=5257 Score = 114 bits (126), Expect = 2e-23 Identities = 170/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||||||| |||||||||||| || ||||| | |||| | ||| | |||| Sbjct 4023 CCTTCCATCAGTGGGCAGGCGTCAACCCCCGTACATTGTCTTAT-GACTTTTCGGAGACC 3965 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || ||| ||| || | Sbjct 3964 TGTGTTTTTGGTAAACAGTCGCCCGAGCCTGGTCACTGTGAC-------------ACCCT 3918 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 3917 TTGT------GAATAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3864 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||| | ||| | ||| | ||||||||||| ||||||||||| |||| | Sbjct 3863 TAGAGAGTGTTGTCTCGAGCCCCTAGGGATTCTCTACCTACCCACCTGTGTCAGTTTTGG 3804 Query 246 GTA 248 ||| Sbjct 3803 GTA 3801 >seq277141 Length=715 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| |||||||||||| |||||||||||||||||| | |||| | Sbjct 11 GGCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGCCGAATTCCTTAGAGAGAGTTGTCT 70 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| ||||| |||| |||| |||| Sbjct 71 CGCGCCCCTAGGTATTCTCTACCTACACACCTATGTCAGTTTCGGGTA 118 >seq219931 Length=3960 Score = 98.7 bits (108), Expect = 1e-18 Identities = 147/206 (71%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | |||||||| ||||| ||| ||| | || Sbjct 2379 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCATGTTACC-ACTTAGCAGAGTCC 2437 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | |||| | | ||| | || |||| | Sbjct 2438 CGTGTTTTTAATAAACAGTCGCTACTCTCTGGTATGTGCAGC--TTTCCTAATCAAAAGA 2495 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | || |||||||||||||||||||||||||| ||||||| ||| ||||| Sbjct 2496 TGG-----GAG----AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGTCGAGTTCCT 2546 Query 186 TAACCACAGTTCACCCGAACGCCTTA 211 | | || |||| | | | |||| || Sbjct 2547 TCAACATGGTTCTCTCAAGCGCCCTA 2572 >seq203404 Length=2728 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||| ||| |||||||| ||||||||||| |||||| | || |||| | | Sbjct 346 GCACCCCTTCTCCTGAATTTACGGGGTCATTTTGCCGAGTTCCTTCAACATGGTTCTCTC 287 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | || |||||| |||||| || ||||||||| ||||| |||| Sbjct 286 AAGCACCCTAGTATACTCTACTTGTTCACCTGTGTTGGTTTTGGGTA 240 >seq154240 Length=1070 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 584 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 643 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| |||| |||||| |||| |||| Sbjct 644 CGCGCCCCTAGTTATTCTCTACCTACCCACTTGTGTCAGTTTCGGGTA 691 >seq10124 Length=868 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||| |||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 867 GCACCCCTTCTACCGAAGTTACGGGGTCATTTTGCCGACTTCCTTCGACATGGTTCTCTC 808 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| |||||| |||||| || ||| |||||||||| |||| Sbjct 807 AAGCGCTCTAGTATACTCTACTTGTTCACTAGTGTCGGTTTGAGGTA 761 >seq270458 Length=4998 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| ||||||| || |||||| | |||| | Sbjct 758 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCTTTGAGAGAGTTGTCT 699 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| |||||||||| |||| |||| Sbjct 698 AGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTTAGTTTCGGGTA 651 >seq201487 Length=10451 Score = 86.0 bits (94), Expect = 9e-15 Identities = 165/238 (69%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 5 TCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGAC 64 |||||||| ||||| ||||| |||| | |||| |||| ||||| ||| ||| | | Sbjct 2037 TCCTTCCAGCACCGTGCAGGTGTCACACTCTATAAATCGTGTTACCA-CTTAGCAGAGTC 1979 Query 65 CTGTGTTTTT-AGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACA 123 |||| ||||| | |||||| ||||| ||| || | | ||| | | | | |||| | Sbjct 1978 CTGTTTTTTTTAATAAACAATCGCTACCCCCTGGTATGTGCCGCTTC-ATAA--TCAAAA 1922 Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 | || | | |||||| ||||| | ||||||||||| ||||||||||| ||| Sbjct 1921 GAT--------AGGA-TAGCACCCTTTCTCTCAAAGTTACGGGGTCATTTTGCCGAGTTC 1871 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||| || |||| | | ||| ||||| ||||| || ||||| |||||||| Sbjct 1870 CTTGGACATGGTTCTCTTAAGTGCCCTAGTACAATCTACTTGTTCACCTATGTCGGTT 1813 >seq99806 Length=18092 Score = 84.2 bits (92), Expect = 3e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 |||||||||||||||| |||||||| ||||||||||| |||||| || ||| | Sbjct 13764 CACCCCTTCTCCCGAAATTACGGGGTCATTTTGCCGAGTTCCTTCGACATGATTCTCTGA 13823 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| || ||| |||||| | ||||| ||||||||| |||| Sbjct 13824 AGCGCCCTAATATACTCTACTTATTCACCTATGTCGGTTTGAGGTA 13869 >seq115976 Length=9789 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||||||||||||||| ||||| | ||||||| | ||||| ||| ||| | | Sbjct 9683 CCTTCCATCACCGGGCAGGTGTCAGACTCTATACATTGTGTTACC-ACTTAGCAGAGTTC 9741 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||||||| |||||||||||| ||| || Sbjct 9742 TGTGTTTTTAATAAACAGTCGCTACCCCCT 9771 >seq69499 Length=1276 Score = 78.8 bits (86), Expect = 1e-12 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||| | ||||| ||| | | | || Sbjct 147 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATTGTGTTACC-ACTTAGTAGAGTCC 89 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||||||| |||||||||||| ||| || Sbjct 88 TGTGTTTTTAATAAACAGTCGCTACCCCCT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692320146140