Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq215068 82.4 8e-14 seq273700 78.8 1e-12 seq270458 78.8 1e-12 seq154240 75.2 1e-11 >seq215068 Length=5257 Score = 82.4 bits (90), Expect = 8e-14 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| || | ||| || || | ||| ||| ||| || ||| | |||| Sbjct 3807 AAACTGACACAGGTGGGTAGGTAGAGAATCCCTAGGGGCTCGAGACAA-CACTCTCTAAG 3865 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| |||| || ||| || | Sbjct 3866 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTATTCACAAA--GGGTG 3923 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| || ||| | ||| |||||||| |||||||||||| || Sbjct 3924 TCACAGTGACCAGGCTCGGGCGACTGTTTACCAAAAACACAGGTCT 3969 >seq273700 Length=14585 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 14065 TAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGACAAGGGGTGCCTCCTCACAAA--G 14008 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| | ||| |||||||| |||||||||||| || Sbjct 14007 GGGGTCGTAGTGACCAGGATCGGGCGACTGTTTACCAAAAACACAGGTCT 13958 >seq270458 Length=4998 Score = 78.8 bits (86), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 713 AAGGAACTCAGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GG 770 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAAC-AAAAACACAGGGCTGTGCCAA 196 | | || || || ||| |||||| |||||||| | ||||||||| | || ||| || Sbjct 771 AAGTCGAAGTGACCAGGCCCAGGCGACTGTTTACCAAAAAACACAAGTCTCTGCAAA 827 >seq154240 Length=1070 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | || |||||||||||| || |||| ||| | || ||| | Sbjct 630 TAAGGAACTCGGCAAAATAGCCTCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 573 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || | ||| || ||||| ||| | |||||| |||||| ||||| || Sbjct 572 GGGGTCACAGCGACCAGGTCTGGGCGATTGTTTACCAAAAAGACAGGTCT 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529608959720