Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq219931 82.4 7e-14 seq115976 82.4 7e-14 seq69499 80.6 3e-13 seq273700 75.2 1e-11 >seq219931 Length=3960 Score = 82.4 bits (90), Expect = 7e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 ||||||| | ||||||||||||||||||||| | ||||||| || | || || Sbjct 2472 ATACCAGAGAGTAGCGACTGTTTATTAAAAACACGGGACTCTGCTAAGTGGTAACATGAT 2413 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 2412 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 2378 >seq115976 Length=9789 Score = 82.4 bits (90), Expect = 7e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || | Sbjct 9776 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGAACTCTGCTAAGTGGTAACACAAT 9717 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| ||||||||||| ||||||| Sbjct 9716 GTATAGAGTCTGACACCTGCCCGGTGATGGAAGGT 9682 >seq69499 Length=1276 Score = 80.6 bits (88), Expect = 3e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||| | || | || | Sbjct 54 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTACTAAGTGGTAACACAAT 113 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGG 148 |||||| || |||| |||||||||||| |||||| Sbjct 114 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGG 147 >seq273700 Length=14585 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 14005 GGTCGTAGTGACCAGGATCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 13946 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||| ||||||| || Sbjct 13945 AAGATCATGTATGGGGGCTGACGCCTGCCCAGTGCTGGAAGGTCAA 13900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475371897580