Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq138374 147 4e-33 seq216602 129 1e-27 seq273700 120 6e-25 seq116622 120 6e-25 seq174268 111 3e-22 seq153355 105 1e-20 seq199587 98.7 2e-18 seq196451 98.7 2e-18 seq307852 96.9 7e-18 seq162437 89.7 1e-15 seq79045 77.0 6e-12 >seq138374 Length=656 Score = 147 bits (162), Expect = 4e-33 Identities = 174/232 (75%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| | |||||| ||||||| |||||||||| |||| |||||| Sbjct 593 GGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGCA 534 Query 172 CCCAAAGATACCCTC-AGCTTGGATGGAAAC---CATGCGCACAGTGCAAAGGCAAAAGG 227 ||||| | |||| ||| ||| ||| | | | || ||| |||||||| |||| Sbjct 533 TGCAAAGGTTTCCTCGAGCC-GGACGGAGATTGGCCTTCG---AGTACAAAGGCAGAAGG 478 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | |||| | ||| | |||||||||||||||| |||| ||||| | | Sbjct 477 GAGCTTGACTGCAAGACCCACCTGTCGACCAGGGACGAAAGTCGGCCTTAGTGATCTGAC 418 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| | ||||| ||||||| ||| ||||||||||| ||| || |||||| Sbjct 417 GGTGCCAAGTGGAAGGGCCGTCTCTCAACGGATAAAAGTTACTCTAGGGATA 366 >seq216602 Length=844 Score = 129 bits (142), Expect = 1e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | || ||||| | |||| | ||| || ||||||||||||| Sbjct 30 AGTGCAAAGGCAGAAGGGAGATTAACTGCAAGACCCACCCGTCGAGTAGGGACGAAAGTC 89 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||| | |||||| || ||||| ||||||| ||| ||||||||||| ||| Sbjct 90 GGCCTTAGTGATCTGACGGTGCCGAGTGGAAGGGCCGTCACTCAACGGATAAAAGTTACT 149 Query 331 CTGGGGATA 339 || |||||| Sbjct 150 CTAGGGATA 158 >seq273700 Length=14585 Score = 120 bits (132), Expect = 6e-25 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | | |||| ||||||| ||||| |||| ||||| |||| Sbjct 13527 GGGACAGTCTCAGGTAGACCGTTTCTATGGGGCGTAGGCCTCTCAAAAGGTAACATAGGC 13468 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229 | ||||| | ||| | |||| ||| | | || | || |||||||||||||| || Sbjct 13467 GTGCAAAGGTTTTCTCGGGATGGACGGAGATCG-GCCCTCAAGTGCAAAGGCAAAAAGGA 13409 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| || || ||| ||||| || |||| | | | | ||| Sbjct 13408 GCTTGACTGCAAGACCCACTTGTCGAGAAGAGACAAAAGTTGGCCTTAGTAAACTGACGG 13349 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| || ||| |||| ||||||||||| ||| || ||||| Sbjct 13348 TGCCCAGTGGAAGGGTCGTTGCTCAACGGATAAAAGTTACTCTATGGATA 13299 >seq116622 Length=2087 Score = 120 bits (132), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| ||||||||| || |||||||| | ||||| | ||| | |||||| Sbjct 1105 TGGGGCGTAGGCCTCCCAAT-AG-AACGGAGGTGTGCAAAGGTTTTCTCGGGCCGGATGG 1048 Query 198 AAACCATGCGCAC----AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTC 253 | ||| | || |||||||||||| ||||| ||||||| | |||| | ||| Sbjct 1047 A---CATTGG-ACTTCGAGTGCAAAGGCAGAAGGGATCTTGACTGTAAGACCCACCCGTC 992 Query 254 TAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTC 313 ||||||||||||| |||| |||| ||||||| |||||| || ||||| | | |||||| Sbjct 991 AAGCAGGGACGAAATTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGTGTCATCGCTC 932 Query 314 GACGGATAAAAGCTACCCTGGGGATA 339 | ||||||||| ||| || |||||| Sbjct 931 AATGGATAAAAGTTACTCTAGGGATA 906 >seq174268 Length=34492 Score = 111 bits (122), Expect = 3e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||| ||| | |||| | ||| ||||||||| |||||| Sbjct 23994 AGTGCAAAGGCAGAAGGGAGCTTGATTGCAAGACCCACCCGTCGAGCAGGGACAAAAGTC 23935 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||| || || ||| || ||||| || |||| ||| || ||||||| ||| Sbjct 23934 GGCCTTAGTGATTCGACGATGCCGAGTGGAAGGGACGTCACTCAACTAATAAAAGTTACT 23875 Query 331 CTGGGGATA 339 || |||||| Sbjct 23874 CTAGGGATA 23866 >seq153355 Length=689 Score = 105 bits (116), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTG-GATGGAAACCATG 205 |||||||||| |||| ||||||| ||||| | |||| ||| | ||| || | Sbjct 593 GCCTCCCAAAAGGTAATGGAGGCGTGCAAAGCTTTCCTCGAGCCGGAGATAGATTG---G 537 Query 206 CGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264 | | | || ||||||||| ||||| |||||| | | | || | ||| |||||||||| Sbjct 536 CCCTCGAGGGCAAAGGCAGAAGGGATCTTGACTACAAGATCCACC-GTCGAGCAGGGACG 478 Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 |||||||| |||| ||||| | |||||| || || || || | |||||| | |||||||| Sbjct 477 AAAGTCGGCCTTAGTGATCAGACGGTGCCGAGTGTAAGGGACATCGCTCAATGGATAAAA 418 Query 325 GCTACCCTGGGGATA 339 | ||| || | |||| Sbjct 417 GTTACTCTAGCGATA 403 >seq199587 Length=6128 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 ||||| | ||||| | |||||| | | |||| | ||| |||||||||||||||||| || Sbjct 4543 AAAGGTAGAAGGGAGCTTGACTACAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCT 4484 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 || |||||| |||||| || || || |||||||| | |||||||| ||| || || Sbjct 4483 TAGTGATCCAACGGTGCCGAGTGAAAGAATCGTCGCTCAATAGATAAAAGTTACTCTAGG 4424 Query 336 GATA 339 |||| Sbjct 4423 GATA 4420 >seq196451 Length=2893 Score = 98.7 bits (108), Expect = 2e-18 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 221 CAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATG 280 || ||||| ||||||||| | | || | ||| | ||||||||||||||| |||| || Sbjct 1621 CATAAGGGAGTTTGACTGTAAGATCCACCCGTCGAACAGGGACGAAAGTCGATCTTAGTG 1562 Query 281 ATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||| || | ||| ||||||||||| ||| |||||| ||| || |||||| Sbjct 1561 ATCCGACGATGCCGAGTTGAAGGGCCGTCGCTCAACGAATAAAAATTACTCTAGGGATA 1503 >seq307852 Length=2499 Score = 96.9 bits (106), Expect = 7e-18 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| || | | |||||| ||||||| |||||| ||| |||| |||||| Sbjct 74 GGGATAGTCTCGGGTAGACAGTTTCTATGGGGCGAAGGCCTCCTAAAAGGTAATGGAGGC 133 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | | ||||| | | ||||| Sbjct 134 GTGCAAAGGTTTCCTCTGGCCGGACGGAGATTG-GCCCTCGACCGCAAATGTAGAAGGGA 192 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| | | |||| | || || ||||| ||||| || |||||||||||| || Sbjct 193 GCTTGACTTCAAGACCCACCCATCGAGAAGGGAGAAAAGTTGGCCTTAATGATCCGACGA 252 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | || ||||| |||||||||| |||||| ||| || || |||||| Sbjct 253 TACCGAGTGGAAGTGCCGTCGCTCAACGGATCAAATTAACTCTAGGGATA 302 >seq162437 Length=881 Score = 89.7 bits (98), Expect = 1e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||| |||||||| |||| | |||||||| | | || | ||| |||||||||||||||| Sbjct 743 AGTACAAAGGCAGAAGGAAGCTTGACTGCAAGAGCCACCCGTCGAGCAGGGACGAAAGTC 684 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || || |||| | |||||| | ||||| | | ||||||| || |||||||| ||| Sbjct 683 GGCTGTAGTGATTTGACGGTGCCGTGTGGAAGGACTGTCGCTCAACAGATAAAAGTTAC 625 >seq79045 Length=1355 Score = 77.0 bits (84), Expect = 6e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| | || | ||| |||||||||||| | || |||||||| || | Sbjct 378 TGACTGTGATACCGACTGGTTGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCC 319 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||| |||||| |||| | |||| ||| ||||||||| Sbjct 318 TGTGTGGAAGGGCTCTCGCTCAACGGGTCAAAGGTACGCTGGGGATA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979362615680