Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq182136 87.8 2e-15 seq114794 86.0 7e-15 seq37320 84.2 2e-14 seq270458 80.6 3e-13 seq252947 78.8 1e-12 seq273700 77.0 4e-12 seq203404 77.0 4e-12 seq295171 75.2 1e-11 seq162193 75.2 1e-11 seq115866 75.2 1e-11 seq105846 75.2 1e-11 >seq182136 Length=319 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 105 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTT 164 Query 173 A 173 | Sbjct 165 A 165 >seq114794 Length=8478 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| || |||||||||| |||||||||||||||||||||||||||||||| Sbjct 288 CCTTTCGTGCGGGGCGGAACTTACTCGACAAGGAATTTCGCTACCTTAGGACCGTTA 232 >seq37320 Length=3974 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||||||||||||||||||||||||||||||| |||||||||||| | || Sbjct 3782 TACGCCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGATCATT 3723 Query 173 A 173 | Sbjct 3722 A 3722 >seq270458 Length=4998 Score = 80.6 bits (88), Expect = 3e-13 Identities = 104/145 (72%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||| || || | | ||||||| ||| Sbjct 1093 GGGTCTTTATGTCCAGGTGCAGGTACTCCGCATCTACATAGAAATGTCTATTTCACCGAG 1034 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || |||||||||||| ||||||||| | Sbjct 1033 C-CTCTCTCTGAGACACTGCCCAGATCGTTACGCCTTTCGTGCAGGTCAGAACTTACCTG 975 Query 144 ACAAGGAATTTCGCTACCTTAGGAC 168 ||||||||||| ||||||||||||| Sbjct 974 ACAAGGAATTTTGCTACCTTAGGAC 950 >seq252947 Length=1430 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||| Sbjct 546 TACACCATTCGTGCAGGTCGCTACTTATATGACAAGGAATTTTGCTACCTTAGGACAGTT 487 Query 173 A 173 | Sbjct 486 A 486 >seq273700 Length=14585 Score = 77.0 bits (84), Expect = 4e-12 Identities = 107/150 (71%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||| |||| || | || || |||||||||| | | | ||||||||||| Sbjct 13686 GGGTCTTCCTGTCCAGGTGCAGATAGTCCGCATCTTCACAAACATGTCTATTTCACTGAG 13745 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | || ||||||| ||| || || ||||| ||||||||||||||| Sbjct 13746 C-CTCTCTTAGAGACAGTGCCCAAATCGTTACGCCTTTTGTGCATGTCGGAACTTACCCG 13804 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | ||||||||| ||||||||| |||| ||| Sbjct 13805 ATAAGGAATTTTGCTACCTTA-GACCATTA 13833 >seq203404 Length=2728 Score = 77.0 bits (84), Expect = 4e-12 Identities = 89/123 (72%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | || | | ||||||| Sbjct 656 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTTGGAGACAGCGCGA 597 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||||| ||| ||||||||| ||||| ||||||||||||| ||||||||| Sbjct 596 CAGTAGTTACAC-ATTTGTGCAGGTCTCTACTTATGCGACAAGGAATTTAACTACCTTAG 538 Query 166 GAC 168 ||| Sbjct 537 GAC 535 >seq295171 Length=4538 Score = 75.2 bits (82), Expect = 1e-11 Identities = 91/128 (71%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || ||||||||| || | | ||||||||| | | || | ||||||| Sbjct 1457 GGTACTCCGCATCTTCATGGAGAATTCAATTTCACCGGGTCCAGGTCGGAGACAGCAGGG 1398 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| |||||| ||||||| ||||| |||||||||||||| ||||||||| Sbjct 1397 CAGTCGTTACGCCATTCTTGCAGGTATCTACTTATGCGACAAGGAATTTCTCTACCTTAG 1338 Query 166 GACCGTTA 173 ||| |||| Sbjct 1337 GACAGTTA 1330 >seq162193 Length=1645 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||||||||||||| |||||| ||||| ||||||||||||| |||||||||||| ||| Sbjct 1437 TACACCATTCGTGTAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGATAGTT 1378 Query 173 A 173 | Sbjct 1377 A 1377 >seq115866 Length=17758 Score = 75.2 bits (82), Expect = 1e-11 Identities = 54/61 (89%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || |||||| ||| ||||||||||||||||| |||||||||||||||||| |||| Sbjct 14530 TACGCCTTTCGTGT-GGTTGGAACTTACCCGACAAGAAATTTCGCTACCTTAGGATCGTT 14588 Query 173 A 173 | Sbjct 14589 A 14589 >seq105846 Length=304 Score = 75.2 bits (82), Expect = 1e-11 Identities = 107/152 (70%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||| || |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 166 GGGTCATTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 107 Query 85 C---TCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 | || | | |||||| ||| || ||| ||| ||| |||||||||| Sbjct 106 CCTTTCTCCG---AGACAGTGCCCAGATCATTACGCCTTTCATGCGGGTAGGAACTTACC 50 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||||||||||||||||||| |||| Sbjct 49 -GATAAGGAATTTCGCTACCTTAGGACTGTTA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545561036820