Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq36516 250 1e-63 seq43214 131 7e-28 >seq36516 Length=1141 Score = 250 bits (276), Expect = 1e-63 Identities = 204/245 (83%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||| |||| || ||||||||||| || ||||||||||||||||| Sbjct 575 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCAAAAGCTTCTTCATCTAAC 634 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151 ||||||||||| |||||||| |||||||||||||| | ||| ||| ||||| || Sbjct 635 CCTGAAGAGCTTGAGATTGAAATTGCTGAAGTTCTGTATGGATTGATGACTCAGTCA-CA 693 Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211 |||||||| |||||||| |||||| |||||| ||||||||||||| |||||| Sbjct 694 AGGACCTTCAAAAAAAGA---AAGTGTACCAAATG---ATACAAGAGAAGT---TAATAA 744 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 745 CAGATCCAGAGTTTCATCTCCTGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 804 Query 272 TGCTG 276 || || Sbjct 805 TGTTG 809 Score = 246 bits (272), Expect = 1e-62 Identities = 194/234 (83%), Gaps = 9/234 (4%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||| Sbjct 908 GCTCCAAAGAGGAAAAGACCAAGGCAAGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGA 967 Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386 |||||||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct 968 AGCAGCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGTTA 1027 Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446 ||||||| ||| |||||||||||||||| |||||| ||| | || ||||||| ||||| Sbjct 1028 GAGGTTTTTTCACCTAATTTGGAGAAGAACCCACAGTCTGCTGCTGAAAATGTTGTTTCT 1087 Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTA 500 ||||||||||| ||| ||||| ||||||||||||| || | |||||||||| Sbjct 1088 TTATATGATTTAAGTGGTTCTGCTCAAAGTTTGCCGGCGGCAGTAGATCCGGTA 1141 >seq43214 Length=1852 Score = 131 bits (144), Expect = 7e-28 Identities = 117/144 (81%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 503 GGAGCCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTAT 562 ||||||||||||| | |||||||| |||||||||||| |||||||| ||||||| ||| Sbjct 1 GGAGCCGATGAAGATGGAATCTGACGTCAAGAGGAGGTCTGATGAAACTGAATT---TAT 57 Query 563 GGAGAGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGA 622 ||||||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || Sbjct 58 GGAGAGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGA 114 Query 623 GAGTAGTATTCATGAGGTTGCTGC 646 | |||||||| ||||| || ||| Sbjct 115 TAATAGTATTCGTGAGGATGTTGC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1958535394840