Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq160254 190 5e-46 seq241514 170 5e-40 seq246708 131 4e-28 seq83070 131 4e-28 seq111675 129 1e-27 seq200792 127 5e-27 seq81308 104 6e-20 seq189244 102 2e-19 seq157766 98.7 2e-18 seq165601 91.5 4e-16 seq218899 80.6 7e-13 seq246607 78.8 2e-12 >seq160254 Length=981 Score = 190 bits (210), Expect = 5e-46 Identities = 293/403 (73%), Gaps = 14/403 (3%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| |||||||||| |||||| ||||| | |||||| ||| Sbjct 923 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGAACCTCCAATTAGTT-TCACCCAAGCTT- 867 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||| | || |||||| || | || ||| | ||| Sbjct 866 CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAATT-GCC 811 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| |||||||||||| | ||||| |||| || ||| |||| | ||||||| Sbjct 810 CTACGAAGACTCGCTTT-CTCTACGGCTCCGGTAGGTTCCCTTAACCAA-GCCACTGCCT 753 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACT 257 || |||||| | | |||| | ||| ||| |||| |||| | | | |||||||| Sbjct 752 ATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCTGGCTCCTCCCACT 695 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 |||| || |||||||||| | ||||||||||| || | |||||||||||| || Sbjct 694 ACTTGGGAGCTTACGGTTTCATGTTCTATTTCACTTCCTGATG-GGGGTTCTTTTCACCC 636 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 |||||||||||||||| || |||||||||| || ||||||||||||| | | |||| Sbjct 635 TTCCCTCACGGTACTACTTTGCTATCGGTCACCTAGGAGTATTTAGCCTTACAAGGTGGT 576 Query 378 CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || |||||| || | || | ||||| || | ||||||| Sbjct 575 CCTTGATTATTCACACGAGATTCCACGTGCCCCATGCTACTCG 533 >seq241514 Length=1285 Score = 170 bits (188), Expect = 5e-40 Identities = 296/414 (71%), Gaps = 15/414 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1022 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 966 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || || Sbjct 965 ACCCAAGCTT-CATCCTGTTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGA-AGT 910 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 || | |||||| ||||||| |||| ||||||| |||| | ||| |||| | Sbjct 909 GAAAATT-GCCCTATGAAGACTCACTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 852 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| | || |||| | | | Sbjct 851 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCATGCGGTCAG--AGCCCTGG 795 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||| | | ||||||||||||||| | ||| | Sbjct 794 CTCCTCCCACTGCTTGGGAGCTTACGGTTTGATGTTCTATTTCACTCCCCCATG-GGGTT 736 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| | |||||||||||||||| ||| |||| ||||| ||| ||||| ||| || Sbjct 735 TCTTTTCACTCTTCCCTCACGGTACTACTTCGCTATTGGTCACCCAGGAGTATATAGACT 676 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 675 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGATACTCG 622 >seq246708 Length=6390 Score = 131 bits (144), Expect = 4e-28 Identities = 266/375 (71%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||||| |||| |||||| ||||| | Sbjct 5979 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGCTCGGACCTCCATTTAGTT-TC 5923 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | | Sbjct 5922 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGCT-GT 5867 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 || | | | ||| |||||||||||| | ||||| ||| | ||| |||| | Sbjct 5866 GAAAATA-GATCTACGAAGACTCGCTTT-CACTACGACTCAGGTGGGTTCCCTTAAT-TA 5810 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 | ||||| || |||||| | |||| | || | || ||| || | | | || Sbjct 5809 AGACACTGCCTATGAGTCGCCTGCTCATTCTTCACA-GGCACGTGGTAAG--AGCC--GT 5755 Query 247 GGG--CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||||||||||| | |||||||||| | ||||||||||| ||| || ||| Sbjct 5754 AGCTCCTCCCACTGCTTAGGAGATTACGGTTTCATGTTCTATTTCACTTCCCACTG-GGG 5696 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || ||| || || |||||| || |||||||||| ||| |||||||||| Sbjct 5695 GTTCTTTTCACCATTCTCTTACAGTACTACTTTGCTATCGGTCACCCAGGAGTATTTAGC 5636 Query 365 CTTGGAGGATGGTCC 379 || | | | |||||| Sbjct 5635 CTAGTAAGGTGGTCC 5621 >seq83070 Length=3691 Score = 131 bits (144), Expect = 4e-28 Identities = 282/406 (69%), Gaps = 22/406 (5%) Strand=Plus/Minus Query 21 CCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT-ACCCAACCTTT 79 ||||| | || |||||| |||||||||||| |||||| || || || |||||| ||| Sbjct 2308 CCGCTGA-TTCTTCAACATTAGTCGGTTCGGACCTCCACTT--TATTTCACCCAAGCTT- 2253 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| || ||||||||| ||| | ||| ||||| || | || || | ||| Sbjct 2252 CATCCTGGTCAC-GGATAGATCACCCAGGTTT-GGGTCAATAAGCAGGC-ACAATT-GCC 2197 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| ||||| | |||| |||||| ||| | ||| |||| | |||||| Sbjct 2196 CTATGAAGACATGATTTT-GCTACGGCTCTGGTGGGTTCCCTTAA-CAAAGCCACTACCT 2139 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---CC 254 || ||| | | |||| | ||| ||| || |||| | | ||||| || Sbjct 2138 ATGAGTTATCGGCTCATTCTTCAACAGGCACATGGTCAG-----AGCCTTGGCTCATCCC 2084 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 ||| |||| || || ||||||| | ||||||||||||||| | |||||||||||| Sbjct 2083 ACTACTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCCGGTG-GGGGTTCTTTTCA 2025 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || ||||||||| |||||| | ||||||||||| ||| ||||||||| |||| | | | Sbjct 2024 CCCTTCCCTCACAGTACTACTAAACTATCGGTCACCCAGGAGTATTTAGGCTTGCAAGGT 1965 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | ||||| | || | ||||| || | ||||||| Sbjct 1964 GGTCCTTTCTGATTCATAGGGGATTCCACGTGCCCCATGCTACTCG 1919 >seq111675 Length=476 Score = 129 bits (142), Expect = 1e-27 Identities = 132/171 (77%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||| ||| | |||||||| Sbjct 470 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTGCCCGATG-GGGGTTCT 412 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || |||||||||||| ||| |||||||||| ||| |||||||||||||| Sbjct 411 TTTCACCCTTGCCTCACGGTACTTCTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGC 352 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 351 AAGGTGGTCCTTGCTAATTCACACGGGATTCCACGTGCCCCATGTTACTCG 301 >seq200792 Length=10112 Score = 127 bits (140), Expect = 5e-27 Identities = 262/375 (70%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||| ||||| | || |||||| ||| ||||||| |||||| ||||| | Sbjct 8083 CCACAACTCA--CCGCTGA-TTCTTCAACATCAGTTGGTTCGGACCTCCACTTAGTT-TC 8028 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || | || ||| ||||||||| ||| | ||| ||||| || | ||| Sbjct 8027 ACCCAAGCTT-CATCTTGGTCAT-GGATAGATCACCCAGGTTT-GGGTCCATAAGC-AGC 7972 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTA----AGC 184 ||| | || || ||||||||||||| |||| | |||| | | ||||| | | Sbjct 7971 GAC-ATTTTCCTTATGAAGACTCGCTTTT-GCTAAGGCTCC---AGTGGGTTACCTTAAC 7917 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | | ||||| || |||||| | |||| | ||| | || | |||| | | Sbjct 7916 TAAGACACTGCCTATGAGTCGCCAGCTCATTCTTCAACAAACACTCGGTCAG--AGCCCT 7859 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | ||||||||||||| | ||| ||||| | ||||||||||| ||| | ||| Sbjct 7858 GGCTCCTCCCACTGCTTGGGATCTAACGATTTCATGTTCTATTTCACTAACCTATG-GGG 7800 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||| |||| || || ||||||| ||||| ||| |||||||||| | | |||||||||| Sbjct 7799 GTTATTTTTACCCTTTCCTCACGTTACTACTTCGCTATCGGTCACTTTGGAGTATTTAGC 7740 Query 365 CTTGGAGGATGGTCC 379 ||| | | |||||| Sbjct 7739 CTTTCAAGGTGGTCC 7725 >seq81308 Length=1198 Score = 104 bits (114), Expect = 6e-20 Identities = 89/108 (82%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||| | ||||||||||||||| | | |||||||||| || |||| ||||||||| Sbjct 1101 GGTTTCATGTTCTATTTCACTCCCCGAT--GTGGTTCTTTTCACCCTTCC-TCACGGTAC 1045 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 || ||| |||||||||| ||| |||||||| ||||| | | |||||| Sbjct 1044 TACTTCGCTATCGGTCACCCAGGAGTATTTAACCTTGCAAGGTGGTCC 997 >seq189244 Length=2127 Score = 102 bits (112), Expect = 2e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||| | ||||||||||||||| | |||||||||||| || || ||||||||||| Sbjct 873 GGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTTCCTCACGGTAC 815 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 || ||| ||||||||| | |||||||||||||| | | |||||| Sbjct 814 TACTTCGTTATCGGTCACCAAAGAGTATTTAGCCTTGCAAGTTGGTCC 767 >seq157766 Length=2582 Score = 98.7 bits (108), Expect = 2e-18 Identities = 266/392 (68%), Gaps = 30/392 (8%) Strand=Plus/Plus Query 33 TCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATA 92 ||||| ||||||| ||| |||||| ||||| | | |||| |||| | |||| ||| Sbjct 980 TCAACATCAGTCGGT-CGGACCTCCACTTAGTT-TCATCCAAGCTTT-ATCCTGGTCAT- 1035 Query 93 GGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACT-AGAC--GCCCTAGTAAGAC 149 |||||||| || | ||| ||||| || ||| ||| | || |||||| ||||| Sbjct 1036 GGATAGATAACCTAGGTTT-GGGTCCATA----AGC-ACTGATACTTGCCCTATGAAGAC 1089 Query 150 TCGCTTTTCGCTACGCCTCCCCTAT-TCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTG 208 ||||| | || || ||| | || |||| | ||||||| || |||||| | Sbjct 1090 TCGCTGT-CGTTATAGCTCTGGTGGGTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCG 1147 Query 209 ACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCA 268 || |||| | || |||| | || || | | | | ||||||||||||| || Sbjct 1148 ACTCATTCTTCAGAAGGCAAGCGGTTAG--AGCCCTGGCTCCTCCCACTGCTTGGGAGCT 1205 Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 ||| ||| | | ||||| ||||| ||||||| | |||| ||||||| | Sbjct 1206 TACACTTTTATGTTCTATGTCACT------TCCGGGGGTTTTTTA------CCCTCACAG 1253 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388 ||||| ||||||||| |||| ||| |||||||||||||| | | |||||| | ||| Sbjct 1254 TACTACTTCACTATCTGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTAATT 1313 Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || || | ||||| || | ||||||| Sbjct 1314 CACACGGGATTCCACGTGCCCCATGCTACTCG 1345 >seq165601 Length=24039 Score = 91.5 bits (100), Expect = 4e-16 Identities = 116/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || || ||| | | | | ||||||||||| | | | |||||||||| || | |||||| Sbjct 13063 GCTTATGGTGTAATGTTGTATTTCACTCCTCAATG-GTGGTTCTTTTCTCCCTACCCTCA 13121 Query 326 CGGTACTAGTTCACTA-TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 384 |||||||| || |||| || |||| ||| |||||||||||||| | | |||||| | Sbjct 13122 CGGTACTACTT-ACTATTCTGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCT 13180 Query 385 TATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| || | || | ||||| || | ||||||| Sbjct 13181 GATTCATACGAGATTCCACGTGCCCCATGCTACTCG 13216 >seq218899 Length=6555 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| ||||||| | ||||||||||| |||||||||| || ||| || | ||| Sbjct 5482 TCTATTGCACTCCC-TAAATAGGGTTCTTTTCATCTTTCCCTCATGGAACTTGTACTCTA 5424 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||| | || | || |||| ||| |||| ||||||||| Sbjct 5423 TCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCC 5383 >seq246607 Length=13040 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/130 (74%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| | |||| ||||| | |||||||||||||| || |||||| | Sbjct 591 CTCCCACTGCTTGGCATCTTACGATTTCATGTTCTATTTCACTCCCTGCT-AGGGGTTAT 649 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 || || || ||||| |||||| ||| | | ||||| || |||||||| |||| Sbjct 650 ATTAACCCTTGCCTCAAAGTACTACATCATTGTTGGTCACCCATGAGTATTTACCCTTAC 709 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 710 AAGGTGGTCC 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237761221120