Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq297676 82.4 5e-14 seq112998 78.8 6e-13 seq148443 75.2 7e-12 seq209274 73.4 2e-11 seq92416 71.6 8e-11 >seq297676 Length=841 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || ||||||| |||| || ||||||| | ||||||||||| |||||||||| Sbjct 695 TCCGAACATT-TCACTAAATCATT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAG 751 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| | |||||| |||| Sbjct 752 GGCAGGGACGTAGT-CAACGCTAGCT 776 >seq112998 Length=814 Score = 78.8 bits (86), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || ||||||| |||| || ||||||| | |||||| |||| |||||||||| Sbjct 9 TCCGAACATT-TCACTAAATCATT-CAATCGGTAGGA-GCGACGAGCGGTGTGTACAAAG 65 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| | |||||| |||| Sbjct 66 GGCAGGGACGTAGT-CAACGCGAGCT 90 >seq148443 Length=443 Score = 75.2 bits (82), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 50 TCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGT 109 ||||||| |||| || ||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 106 TCACTAAATCATT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGT 49 Query 110 AATACAACGCAAGCT 124 | | ||||| |||| Sbjct 48 AGT-TAACGCGAGCT 35 >seq209274 Length=858 Score = 73.4 bits (80), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| || ||||||| ||| || ||||||| | ||||||||||| |||||||||| Sbjct 701 TCCGAACATT-TCACTAAATTATT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAG 757 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| | ||||| |||| Sbjct 758 GGCAGGGACGTAGT-CAACGTGAGCT 782 >seq92416 Length=443 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||| ||||| |||||||||||||||||||||| | |||||| | Sbjct 139 TTCAATCGGTAGGA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 82 Query 122 GCT 124 ||| Sbjct 81 GCT 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299928112400