Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq257560 190 4e-46 seq254282 181 2e-43 seq195500 176 9e-42 seq246708 131 3e-28 seq126848 125 1e-26 seq215068 123 5e-26 seq234167 113 9e-23 seq32527 109 1e-21 seq246607 98.7 2e-18 seq170048 98.7 2e-18 seq249600 91.5 3e-16 seq72941 89.7 1e-15 seq185120 87.8 4e-15 seq114730 78.8 2e-12 seq249906 77.0 6e-12 seq203364 77.0 6e-12 seq185441 77.0 6e-12 seq223847 75.2 2e-11 seq102087 73.4 8e-11 >seq257560 Length=520 Score = 190 bits (210), Expect = 4e-46 Identities = 227/305 (74%), Gaps = 16/305 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || | ||||||||||||||| Sbjct 9 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTGATTGCTGCCTCCCGTAG 68 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||| ||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 69 GAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 128 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| |||||||| | |||||| | ||||||||| || | Sbjct 129 CATCGCCTTGGTAAGCTATTGCCTCACCAATAAGCTAATCAGACGCGAGCCCCTCCTCGG 188 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | |||| | ||| ||||| | | | | ||||||||| | Sbjct 189 GCG--GATTCTT---------CCTTTTGC--TCCTCAGCC--TCCGAGGTATTAGCAGCC 233 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||| |||| |||| || || ||||| || ||| |||||| |||||||||| Sbjct 234 GTTTCCAGCTGTTGTTCCCCTCTAAAGGGTAGGTT-CTTACGCGTTACTTACCCGTCCGC 292 Query 301 CACTA 305 ||||| Sbjct 293 CACTA 297 >seq254282 Length=1581 Score = 181 bits (200), Expect = 2e-43 Identities = 225/306 (74%), Gaps = 18/306 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || ||||||||||||||||||||| Sbjct 366 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 425 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||| ||| | |||||| | ||| |||||| | || |||| ||| Sbjct 426 GAGTCTGGGCCGTGTCTCAATCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGAT 485 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| || |||||||| || ||| | ||| |||| || || Sbjct 486 CATCGCCTTGGTAAGCTATTGCCTTACCAACTAGCTTATCAGACGCCAGCCACTCCTTGG 545 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| | || | | || | ||||||||| Sbjct 546 GCGGATTCCTCCTT------------TTGC--TTTTCAGCC--TACGGGGTATTAGCAGC 589 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 590 CGTTTCCAGCTGTTTTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 648 Query 300 CCACTA 305 |||||| Sbjct 649 CCACTA 654 >seq195500 Length=555 Score = 176 bits (194), Expect = 9e-42 Identities = 144/175 (82%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| ||||||| | || || ||||||||||||||| ||||| Sbjct 241 GGCATTGCTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAG 182 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 181 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 122 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| |||||| |||||| ||||||||||| |||||| | |||||||| || Sbjct 121 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGATGCGAGCCCCTC 67 >seq246708 Length=6390 Score = 131 bits (144), Expect = 3e-28 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 1946 GGCATTGCTCCGTCAGGATTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 1887 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||| ||||||||||| | | ||| | ||| ||||| || ||||| ||| Sbjct 1886 AAGTCTGGGCCATGTCTCAGTCCTAGTATGGTTGATCATTCTCTCGAACCAGCTACTGAT 1827 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | | | || ||| | |||| |||||||||| ||||| | |||| |||| || Sbjct 1826 CATTGCCTCGGTAAGATATTGCCTCACCAACTGAATAATCAGACGCGTGCCCCTC 1772 >seq126848 Length=563 Score = 125 bits (138), Expect = 1e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| | ||||| | ||||| |||||||||||||||| ||||||||||||||| Sbjct 455 TCAGGCTTTCGCTCATTGCGGAATATTCCCCACTGCTGCCTCCGGTAGGAGTCTGGGCCA 514 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||||||||||||| |||||| | ||| |||||| | || ||||| |||| Sbjct 515 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATC 563 >seq215068 Length=5257 Score = 123 bits (136), Expect = 5e-26 Identities = 115/145 (79%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||| ||| ||||||||||||||||||| Sbjct 1382 GCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCC-ACTACTGCCTCCCGTAGGAGTCT 1324 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 | ||||||||||||||||||| || | ||| |||||| | | | ||| |||| ||| Sbjct 1323 TGATCGTGTCTCAGTCCCAATGTAGCTGATCATCCTCTCGGAACAGATACTGATCATCGT 1264 Query 127 CTTGGTGGGCTATTATCTCACCAAC 151 |||||| | |||| ||||||||| Sbjct 1263 CTTGGTAAGTTATTTCCTCACCAAC 1239 >seq234167 Length=15755 Score = 113 bits (124), Expect = 9e-23 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||| | |||| | ||||| | || || |||||||||||||||||| |||||||| Sbjct 570 GCTCCATCAAGCTTTCGCTCATTGCGAAAAATTCCCCACTGCTGCCTCCCGCAGGAGTCT 629 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 ||||||||||||| ||||| |||||| ||| |||||| | || ||||| Sbjct 630 GGGCCGTGTCTCAATCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTAC 679 >seq32527 Length=6276 Score = 109 bits (120), Expect = 1e-21 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 11 CATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70 ||| ||| |||| |||||| | || || |||||||| |||||||| ||||||||||||| Sbjct 1268 CATAAGGCTTTCACCCATT-TCTAAAATTCCCCACTGTTGCCTCCCATAGGAGTCTGGGC 1210 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||| |||||| | ||||| | ||| |||||| | | |||| ||| || |||| Sbjct 1209 AGTGTCCCAGTCCAACTGTGGATGATCATCCTCTCGGACAAACTACTTATCATCTCCTTG 1150 Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || |||| ||||||| ||| |||||| || |||||| || Sbjct 1149 GTAACTTATTGCCTCACCAGCTAGCTAATCATACGTGAGCCCCTC 1105 >seq246607 Length=13040 Score = 98.7 bits (108), Expect = 2e-18 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | || || ||| |||||| | || ||||||| || ||||| || | Sbjct 4324 GGCATTGCTCCGTCTGGCTTTTGTCCATTGCATTAAATTCCCCACTACTCCCTCCTGTGG 4383 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| |||| |||||||| ||||| |||| | | ||| |||||| | || ||||| || Sbjct 4384 GAGTATGGGTGGTGTCTCAATCCCAGTGTGACTGATCATCCTCTCGGACCAGCTACTGAA 4443 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 | ||| |||||| |||| ||||||||||| ||||| Sbjct 4444 CATCGCCTTGGTAACTTATTGCCTCACCAACTAGCTAAT 4482 >seq170048 Length=6955 Score = 98.7 bits (108), Expect = 2e-18 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 20 TTCCCCC-ATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78 |||| || ||||| ||| || |||||||| |||| ||||| |||||| ||| ||||||| Sbjct 5227 TTCCTCCGATTGTCCAAGATTCCCCACTGATGCCCCCCGTGGGAGTCAAGGCGGTGTCTC 5168 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTA 138 ||||||| |||||| | ||| || || | || | ||| | ||||||||| || Sbjct 5167 AGTCCCAGTGTGGCTGATCATCCAAAAAGACTTGCGATGCATCATAGGCTTGGTGAGCCT 5108 Query 139 TTATCTCACCAACTACCTAAT 159 ||| || ||||||||||| || Sbjct 5107 TTACCTGACCAACTACCTTAT 5087 >seq249600 Length=758 Score = 91.5 bits (100), Expect = 3e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| || || |||||| Sbjct 646 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC-CCTGTCGGAGTCC 704 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||| ||||||||||||| | |||||| | ||| || Sbjct 705 GGGTCGTGTCTCAGTCCTAGTGTGGCTGATCATCC 739 >seq72941 Length=14959 Score = 89.7 bits (98), Expect = 1e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || |||||||||| | | |||||||||||| | ||||||||||||| | || ||| Sbjct 1171 AAAATTCCCCACTGCTTCTTACCGTAGGAGTCTTAGTCGTGTCTCAGTCCTAGTGGGGCT 1230 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | ||| ||| || | || ||||| ||| || || | |||||| ||||| ||||| Sbjct 1231 GATCATCCTTTCGGACCAGCTACTAATCATCAAATTAGCAAGCTATTTCCTCACTAACTA 1290 Query 154 CCTAATCGGCCGCGAGCCCATC 175 |||||| ||||| ||| || Sbjct 1291 GCTAATCAAACGCGATCCCTTC 1312 >seq185120 Length=1973 Score = 87.8 bits (96), Expect = 4e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| | |||| |||||||| ||| || |||||||| ||| ||||| |||||| Sbjct 1869 GCTGGATCGGACTTTCTCCCATTGTTCAAGATTCCCCACTGTAGCCCCCCGTGGGAGTCC 1928 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||||||||||||| ||| |||||| Sbjct 1929 GGGCCGTGTCTCAGTTCCATTGTGGC 1954 >seq114730 Length=7283 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCA-TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC 65 ||| ||||||| ||| |||| ||| | || | ||||||| ||||||| ||||||||| Sbjct 6554 GCTCCATCAGGCTTTTGCCCAATTGCGGAAAACTCCCCACTATTGCCTCCTGTAGGAGTC 6495 Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||| |||||| ||| ||| ||| || ||| |||||| Sbjct 6494 TGGGCTGTGTCTTAGTTCCAGTGTAGCTTATCATCCTCTC 6455 >seq249906 Length=3078 Score = 77.0 bits (84), Expect = 6e-12 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCC-CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC 65 ||| | ||||| ||| | ||||||| || || || |||||||||||| | || ||| | Sbjct 626 GCTCCGTCAGGCTTTTGCTACATTGTGAAAAATTCCTCACTGCTGCCTCTCATAAGAGCC 567 Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||||||||||||||||||| ||| || Sbjct 566 TGGGCCGTGTCTCAGTCCCAGTGTAGC 540 >seq203364 Length=1248 Score = 77.0 bits (84), Expect = 6e-12 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCC-CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTC 65 ||| | ||||| ||| | ||||||| || || || |||||||||||| | || ||| | Sbjct 623 GCTCCGTCAGGCTTTTGCTACATTGTGAAAAATTCCTCACTGCTGCCTCTCATAAGAGCC 682 Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||||||||||||||||||| ||| || Sbjct 683 TGGGCCGTGTCTCAGTCCCAGTGTAGC 709 >seq185441 Length=776 Score = 77.0 bits (84), Expect = 6e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| ||||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 747 GGTATTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 689 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 688 CTCACCCGTCCGCCACT 672 >seq223847 Length=21750 Score = 75.2 bits (82), Expect = 2e-11 Identities = 98/136 (72%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| ||| || |||||||||| || ||| | || ||| ||||||||||||| Sbjct 20021 CCCATTGTCCAAGATTCCCCACTGCTTCCCCCCATGGGCGTCAACATCGTGTCTCAGTCC 19962 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 | ||||| | ||| || || || || | ||| | |||| |||| || ||| | Sbjct 19961 CTGTGTGGATGATCATCCAAAAAGACCAGCGAAGCATCATTGGCTCGGTGAGCCTTTACC 19902 Query 144 TCACCAACTACCTAAT 159 | ||||| |||||||| Sbjct 19901 TGACCAAATACCTAAT 19886 >seq102087 Length=6386 Score = 73.4 bits (80), Expect = 8e-11 Identities = 108/152 (71%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| ||| || ||||||||||||| || | |||||| |||||||||||||| | Sbjct 4159 CCCATTGTCCAAGATTCCCCACTGCTGCCCCCTG--GGAGTCCAGGCCGTGTCTCAGTAC 4102 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 | ||||| | ||| || || || ||| ||| | | |||||| | ||| | Sbjct 4101 TAGTGTGGTTGATCATCCGAAAAGACCAACTAAGCATCATTGTCTTGGTCAACCTTTACC 4042 Query 144 TCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | || ||||||| ||| | ||| || |||| Sbjct 4041 TGACAAACTACCAAATAGTGCGCAAGGTCATC 4010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995313146880