Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq297019 123 2e-26 seq246708 116 3e-24 seq291869 105 6e-21 seq199449 105 6e-21 seq83907 91.5 1e-16 seq170048 89.7 4e-16 seq215068 87.8 1e-15 seq201570 86.0 5e-15 seq179054 86.0 5e-15 seq144296 86.0 5e-15 seq102087 77.0 3e-12 seq185120 75.2 9e-12 seq18495 75.2 9e-12 >seq297019 Length=4214 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 391 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 333 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 332 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 273 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 272 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 233 >seq246708 Length=6390 Score = 116 bits (128), Expect = 3e-24 Identities = 120/156 (77%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 6 TTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTG 65 |||||| | ||||||| |||| || || ||| |||| ||||||| |||||||||| | Sbjct 2841 TTGCAGCTTGCAATCCGAACTAAGA-ACGGTTTTTGGGGTTAGCTCACCCTCGCGGGATC 2783 Query 66 GCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGG 125 ||| || | ||| | ||||||| ||||||| |||| ||||| || ||||| | Sbjct 2782 GCGACCTTTTGTCTCAGTCATTGTAGCACGTGTGTCGCCCAGGGCATAAAGGGCATGATG 2723 Query 126 ACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||| ||||||||||||| || |||| Sbjct 2722 CCTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2687 >seq291869 Length=1521 Score = 105 bits (116), Expect = 6e-21 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| || ||||||||||| || | |||| Sbjct 737 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACAGGTTTCGGGATTAGCTCACCTTTGCGG 795 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| |||||||| ||||||| |||| || ||||| ||| Sbjct 796 GATCGCGATCCTTTGTCCCGGCCATTGTAGAACGTGTGTCGCCCAGGGCAGAAGGGGCAT 855 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||| || || || |||| Sbjct 856 GATGACTTGACGTCATCCTCACCTTCGTCTGGCTTATCAC 895 >seq199449 Length=2486 Score = 105 bits (116), Expect = 6e-21 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||||||| |||||||| ||| | | ||||| | ||| ||||| ||| | | Sbjct 634 AGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCAG-ATTCGCTCCACCTTACAGCC 692 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | || ||| |||| | |||||||| ||||||| ||| ||||||||||| ||| Sbjct 693 TTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGTCCCAGCCCATAAGGGCAATGC 752 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||| || | |||| Sbjct 753 GGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 790 >seq83907 Length=5394 Score = 91.5 bits (100), Expect = 1e-16 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| |||||||| | |||| || ||| | | || | ||||| |||||||||| Sbjct 5128 GAGTTGCAGCCTACAATCTGAACTAAGA-ACATATGTTTGGTTGAGCTCACCCTCGCGGG 5070 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| | ||| ||| | ||||| ||| | | ||||| |||| Sbjct 5069 ATTGCGACCCTTTGTCC-TGGCATAGTAGCATGTGTGTCGCCTAAGGCCAAAGGGGCATG 5011 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | |||||| |||||| ||||||||||| | || |||| Sbjct 5010 ATGGCTTGACCTCATCCTCACCTTCCTCCAGCTTATCAC 4972 >seq170048 Length=6955 Score = 89.7 bits (98), Expect = 4e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 ||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||| Sbjct 5975 CCATTGTATCATGTGTGTGGCCCAGCCCATAAGGGCCATGCAGACTTGACGTCATCCCCA 5916 Query 143 CCTTCCTCCGGTTTGTCAC 161 || |||||| || | |||| Sbjct 5915 CCGTCCTCCAGTATATCAC 5897 >seq215068 Length=5257 Score = 87.8 bits (96), Expect = 1e-15 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| || | ||||||| ||||||||| | | | |||| ||| | |||||| | ||| Sbjct 2249 TTTTTGAGGTTAGCTCACCCTCGCGGTATTGTGACCCTTTGTCTCGGCCATTGCAGCACG 2190 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| ||| ||||||||||| |||||||||| | | Sbjct 2189 TGTGTTGCCCAGGGCATAAGGGTCATGATGACCTGACGTCATCCTTACCTTCCTCCAGCT 2130 Query 156 TGTCAC 161 | |||| Sbjct 2129 TATCAC 2124 >seq201570 Length=32939 Score = 86.0 bits (94), Expect = 5e-15 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53 CCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCAT 112 |||||||||| | | | |||| | | | |||||||| ||||||| |||| ||| Sbjct 2553 CCCTCGCGGGATAGAGACCCTTTTTCTCGGCCATTGTAGCACGTGTGTCGCCCAGGGCAT 2612 Query 113 AAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 ||||| ||||| ||||||||||||||| |||||||||| || || || Sbjct 2613 AAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCAGGCTTATC 2659 >seq179054 Length=15728 Score = 86.0 bits (94), Expect = 5e-15 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| ||||||| |||| ||||||||||| |||| ||||||||||| Sbjct 6578 TGTAATTGCCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGTCATGTGGACTTGACGT 6637 Query 135 CATCCCCACCTTCCTCC 151 |||||||| |||| ||| Sbjct 6638 CATCCCCATCTTCTTCC 6654 >seq144296 Length=1631 Score = 86.0 bits (94), Expect = 5e-15 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| |||| | ||| |||| ||||||| || |||||| Sbjct 861 CGAGTTGCAGCCTGCAATCAAAACTAAGGACGGGTTTTTGGGGTTAGCTCACCATCGCGG 802 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | ||| ||| | |||||| ||||||| |||| |||||| | ||| Sbjct 801 GATCACCATCCTTTGTCCTGGCAATTGTAGCACGTGTGTCGCCCAGGGCATAAGAGACAT 742 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGG 153 || |||||| |||||||| ||||||||||||| Sbjct 741 GATGACTTGCCGTCATCCTCACCTTCCTCCGG 710 >seq102087 Length=6386 Score = 77.0 bits (84), Expect = 3e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 |||| |||| | |||||||| |||| || |||| ||||||| ||||||| || ||| Sbjct 5376 CCCTTTGTAATTGCCATTGTAGAACGTTTGTGGCCCAGCCCATAAAGGCCATGCGGTCTT 5317 Query 130 GACGTCATCCCCACCTTCCTCC 151 ||||||||||||| |||| ||| Sbjct 5316 GACGTCATCCCCAACTTCATCC 5295 >seq185120 Length=1973 Score = 75.2 bits (82), Expect = 9e-12 Identities = 109/153 (71%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| ||||||| ||| | | ||||| | || |||| ||| | | Sbjct 1049 CGAGTTGCAGAGAACAATCCAAACTGAGGCAATCTTTCCAG-ATATGCTCAGCCTTACAG 1107 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | || |||| ||||||| |||| | ||||||||||| Sbjct 1108 CCTTGCTTCCCATTGTAATTGTCAATGTAGCACGTGTGTTGCCCAGCATATAAGGGCCAT 1167 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 ||||||||||| || ||||||| ||||||| || Sbjct 1168 GAGGACTTGACATCGTCCCCACTTTCCTCCAGT 1200 >seq18495 Length=6884 Score = 75.2 bits (82), Expect = 9e-12 Identities = 116/161 (72%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACAC-TTTCTGGGATTAGCTCCCCCTCGC 59 ||||||||| || |||||| | | ||| || ||| |||| ||||||| |||| || Sbjct 6620 CGAGTTGCAACCTGCAATCCAAATT--GATGACGGGTTTTTGGGGTTAGCTCACCCT-GC 6564 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || |||| ||| | | ||||||| ||||||| ||| | |||||| | Sbjct 6563 GGGATCTCGACCCTTTGTCTCAAAAATTGTATCACGTGTGCCGCCGAAGGCATAAGAAGC 6504 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || |||| ||||||||| |||||||||||| || ||| Sbjct 6503 ATAGTTACTTCACGTCATCCTCACCTTCCTCCGACTTATCA 6463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414754004600