Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq144296 131 3e-28 seq254282 129 1e-27 seq195500 113 7e-23 seq291869 104 4e-20 seq102087 102 1e-19 seq223847 89.7 8e-16 seq246708 87.8 3e-15 >seq144296 Length=1631 Score = 131 bits (144), Expect = 3e-28 Identities = 202/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 7 CTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCC 66 |||||| ||||| |||||| | | ||| || || |||||| |||||||| | | Sbjct 319 CTTTCGTCTCTCAGTGTCAGTGTCGGCCCATCAGAGTGCTTTCGCCGTTGGTGTTCTTTC 260 Query 67 GTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGA 126 || ||||||||||||| |||| ||| | |||||| |||| || | | |||| || Sbjct 259 CGATCTCTACGCATTTCATCGCTCCACTGGAAATTCCCTCTGCCCCTACCGTACTCCAGC 200 Query 127 AAAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 | |||||||| || ||||| |||||||||| | ||| || | ||||| Sbjct 199 ATGGTAGTTTCAACCGC---CTATGTAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAA 143 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || |||||| | |||||| |||||| | |||||||||||||||| | | |||| Sbjct 142 AAAGCCACCTACAGACGCTTTACGCCCAATTATTCCGGATAACGCTTGCATCATCTGTAT 83 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||| | ||||||| |||||| || ||||||| ||| || Sbjct 82 TACTGCGGTTTCTGGCACAGAGTTAGTCGATAGTTATTCCCCAGATA 36 >seq254282 Length=1581 Score = 129 bits (142), Expect = 1e-27 Identities = 196/278 (71%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 21 GCTTTCGTCTCTCAGTGTCAGTGTCGG-CCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 79 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||||||| || | |||| | |||| || | | |||| || Sbjct 80 CCGATCACTACGCATTTCACCGCTCTACCAGAAATTACCTCTGCCCCTACCGTACTCCAG 139 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | |||||||||||| | ||| || | ||| | Sbjct 140 CTTGGTAGTTTCCACCGCCTGTCCTGGGTTGAGCCCTGGGATTTGACGGCAGACATAAAA 199 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||| | | |||||| |||||| | |||| ||||||||||| ||| |||||| Sbjct 200 AGCCACCTATAGACGCTTTACGCCCAATCATTCCGAATAACGCTTGCATCCTCTGTATTA 259 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||| ||||| ||||||||| ||||||||| Sbjct 260 CCGCGGCTGCAGGCACAGAGTTAGCCGATGCTTATTCC 297 >seq195500 Length=555 Score = 113 bits (124), Expect = 7e-23 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || |||||| |||||||| | | || ||||||||||||||| || ||| |||||| Sbjct 549 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCACTCCACCGAAAATTCC 490 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 | || || | | |||| || |||||| | || | ||||||||||| Sbjct 489 CTCTTCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTG 430 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | |||| || |||||| | |||||| |||||| | ||||||| Sbjct 429 GGATTTGACGGCGCACTTAAAAATCCACCTACAGACGCTTTACGCCCAATCATTCCGGAT 370 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || || ||| ||| |||||||||||||||| ||||| |||||||| ||||||||| Sbjct 369 AAAGCATGCATCCTCTGTATTACCGCGGCTGCCGGCACAGAGTTAGCCAATGCTTATTCC 310 Query 284 TCAGGTA 290 ||| || Sbjct 309 CCAGATA 303 >seq291869 Length=1521 Score = 104 bits (114), Expect = 4e-20 Identities = 196/286 (69%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCA-ATCCGCCTTCGCCACTGGTGTTCCT 64 ||||||| |||| |||||| | |||| | || || ||| ||| |||||||| | Sbjct 1231 GCTTTCGTCTCTCAATGTCAGTGTCGACCCAGTAGAT--GCTTTCACCATTGGTGTTCTT 1288 Query 65 CCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAA 124 || |||| ||||||||||||| ||| | |||||| |||| || | | |||| | Sbjct 1289 TTCGATCTCTAAGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCA 1348 Query 125 GAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | | |||| | || | ||||||| || | ||| || ||||| Sbjct 1349 GCTTGGTATTTTCCACCGCCTGTCCAGGGTTGATCCTTGGGATTTGACGGTGGACTTAAA 1408 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| |||||| | |||| | || ||||||||||||| ||| ||||| Sbjct 1409 AAGCCACCTACAGATGCTTTACGCTCAATCATTCTGGATAACGCTTGCATCCTCTGTATT 1468 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||||| ||||||||| ||||||||| ||| || Sbjct 1469 ACCACGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1514 >seq102087 Length=6386 Score = 102 bits (112), Expect = 1e-19 Identities = 199/291 (68%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||| | ||||||||||||| |||| | | |||||||| ||| | Sbjct 4532 CCCATGCTTTGGAACCTCAGCGTCAGTAGGGACCCAGGCAGCTGCCTTCGCTTTTGGC-T 4474 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| | |||||||| || ||||| |||||| | ||| | ||| Sbjct 4473 TCCTTCGTAGATCTCCAGATTTCACCCATATACACGAAATTCCTCTCTCCTATGTCTCAC 4414 Query 121 TCAAGAAAAACAGTTTCAAATGCA---GGCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| ||| ||||||| ||| ||| | ||| | | |||||| | Sbjct 4413 TCAAGTAAATTGGTTTCAAGAGCATTCGGCAAGTTTTTGG-----TGGCTTTCACTTTCT 4359 Query 178 ACTTGCCTTCCCGCCTACAC---GCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 || | | | ||| ||| ||||||||| |||| | | |||| | ||| ||||||| Sbjct 4358 ACCCGATT---CACCTTCACTGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCA 4302 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || || |||||| ||||||||||||| |||||| | ||||| |||||| Sbjct 4301 CCCCTGTCTTACCGTGGCTGCTGGCACGGAGTTAGGCAGGGCTTCTTCCTC 4251 >seq223847 Length=21750 Score = 89.7 bits (98), Expect = 8e-16 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||||| | || | | || |||||| || ||| ||| Sbjct 20208 CCGCCTACGTGCCCTTTACGCCCAATCATTCTGAAAAAGACTTGCC--CTTCGTCTTATT 20151 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||| |||||||| ||||||||||||| ||| Sbjct 20150 GCGACTGCTGGCACGGAGTTAGCCAGGGCTTATTCCTCAAGTA 20108 >seq246708 Length=6390 Score = 87.8 bits (96), Expect = 3e-15 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || ||| || |||||||| | | || |||| ||||||||||||| ||| | |||||| Sbjct 2255 GCTTTCACCGTTGGTGTTCTTTCCGATCTCTATGCATTTCACCGCTCCACTAGAAATTCC 2196 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || || |||| || ||||| | | | |||||||||| Sbjct 2195 CTCTGCCCCTACAATACTCCAGCTTGGTAGTTTGTACCACCTGTCCAGGGTTGAGCCATG 2136 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| | ||||| || |||||| | ||||||||||||| | |||| || Sbjct 2135 GGATTTGATGGTGGACTTAAAAAGCCACCTACAGACGCTTTACACCCAATCATTCCGAAT 2076 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||| | |||||||| |||||| |||||| ||||||||| |||||||| Sbjct 2075 AACGCTTGAATTATCAGTATTACCACGGCTGTTGGCACAGAGTTAGCCGATACTTATTCC 2016 Query 284 TCA 286 || Sbjct 2015 CCA 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826317593780