Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq128173 111 2e-22 seq125096 96.9 4e-18 seq171910 87.8 2e-15 seq192372 78.8 9e-13 seq260926 77.0 3e-12 seq276645 75.2 1e-11 seq266406 75.2 1e-11 seq96282 75.2 1e-11 seq93882 75.2 1e-11 seq83264 75.2 1e-11 seq124878 73.4 4e-11 >seq128173 Length=677 Score = 111 bits (122), Expect = 2e-22 Identities = 137/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 320 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTA-GCTCTATATACATTAGCA 378 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | ||| ||||| ||| || | |||| | |||||| Sbjct 379 TGGGATAACATTATAGGATTTT-GGTCCTATTATGTTGGCCTTCAGGATTGGA-GTAATG 436 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | |||| ||| |||| |||| | ||||| || || ||||||||||||||||||| Sbjct 437 TTTAATAGGGACAGTCAGGGGCATTCGTATTTCATATTCTGAGGTGAAATTCTTGGATTT 496 Query 189 AT 190 || Sbjct 497 AT 498 >seq125096 Length=400 Score = 96.9 bits (106), Expect = 4e-18 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| || | |||| | | |||| | |||| ||| | |||||||| ||| Sbjct 88 CTGTTACTTTGAAGAACT-AGAGTGCTTAAAGAAAGCCTACGCTTTGTATACATTAGCAT 146 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| |||| || || | |||| || ||||||| Sbjct 147 GGGATAACATTATAGGATTT-CGGTCATATTACGTTGGCCTTCAGGATCGGA-GTAATGA 204 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | |||||||||||| | ||||| || |||| ||||||||| |||||||||| Sbjct 205 TTAACAAGGATAGTCGGGGACATTCGTATTTCATAGTCAGAGGTGAAATGCTTGGATTTA 264 Query 190 T 190 | Sbjct 265 T 265 >seq171910 Length=882 Score = 87.8 bits (96), Expect = 2e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| || ||| || | |||||| | ||| ||| | |||||||| ||| Sbjct 414 CTGTTACTTTGAAGAA-TTACAGTGCTCAAAGAAATCCTACACTCTGTATACATTAGCAT 356 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 | |||| | ||||| | | || |||| || || | |||| || ||||||| Sbjct 355 AGGATAACATTATAGGTTTT-CTGTCATATTACGTTGGCCTTCAGGATCGAA-GTAATGA 298 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 297 TTAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCACAGGTGAAATTCTTGGATTTA 238 Query 190 T 190 | Sbjct 237 T 237 >seq192372 Length=471 Score = 78.8 bits (86), Expect = 9e-13 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 59 TACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC 118 ||||||| ||||| |||| | |||||| | |||| |||| | || || | || | Sbjct 471 TACATTAGCATGGGATAACATTATAGGATTT-CGGTCATATTACATTGGCTTTCAAGATC 413 Query 119 GCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAAT 178 | |||||||| || | ||| ||||||||| | ||||| || |||| ||||||||| Sbjct 412 GGA-GTAATGATTAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 354 Query 179 TCTTGGATTTAT 190 |||||||||||| Sbjct 353 TCTTGGATTTAT 342 >seq260926 Length=2706 Score = 77.0 bits (84), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 ||||| || ||||| |||| | |||| | | |||| ||||| ||| || | |||| Sbjct 1722 ATACACTATCATGGGATAACATTATAGTATTT-CGGTCCTATTATGTTGGCCTTCAGGAT 1664 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || ||||||||||||| Sbjct 1663 CGGA-GTAATGATTAACATGGAAAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAA 1605 Query 178 TTCTTGGATTTAT 190 ||| | ||||||| Sbjct 1604 TTCAT-GATTTAT 1593 >seq276645 Length=455 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | | | |||| || || | |||| Sbjct 236 ATACATTAGCATGGGATAACATTATAGGATTTTTG-TCATATTACGTTGGCCTTCAGGAT 178 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| |||| |||| | ||||| || ||||||||||||| Sbjct 177 CGGG-GTAATGATTAACAAGGACAGTCAGGGGCATTCGTATTTCATAGTCAAAGGTGAAA 119 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 118 TTCTTGGATTTAT 106 >seq266406 Length=533 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | | || ||||| || || | ||| Sbjct 243 ATACATTAGCATGGGATAACATTATAGGATTT-CAGTCCTATTACGTTGGCCTTCGGGAT 185 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 | |||||||| || | ||| |||||||||| | ||||| || |||| |||||||| Sbjct 184 TGGA-GTAATGATTAACAGGGACAGTCGGGGGTATTCGTATTTCATAGTCATAGGTGAAA 126 Query 178 TTCTTGGATTTAT 190 ||||| ||||||| Sbjct 125 TTCTTTGATTTAT 113 >seq96282 Length=357 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| |||| | || | |||| Sbjct 306 ATACATTAGCATGGGATAAGATTATAGGATTT-CGGTCATATTACATTGGCCTTCAGGAT 248 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||| ||| Sbjct 247 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTAAAA 189 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 188 TTCTTGGATTTAT 176 >seq93882 Length=420 Score = 75.2 bits (82), Expect = 1e-11 Identities = 98/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | ||||| | |||| ||||| || || | |||| Sbjct 203 ATACATTAGCATGGGATAACATTATAGGTTTT-CGGTCCTATTACGTTGGCCTTCAGGAT 145 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 | |||||||| || | ||| ||||||||| | |||| || ||||| ||||||| Sbjct 144 CTGT-GTAATGATTAACAGGGACAGTCGGGGGCATTCATATTTCATAGTCAAGGGTGAAA 86 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 85 TTCTTGGATTTAT 73 >seq83264 Length=540 Score = 75.2 bits (82), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGA 116 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || ||| || Sbjct 252 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTATGTTGGCCTTCGAGAT 310 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 | | |||||||| || | ||| | || |||| | ||||| || |||||||||||| Sbjct 311 CGGA--GTAATGATTAACAGGGACAATCAGGGGCATTCGTATTTCATAGTCAAAGGTGAA 368 Query 177 ATTCTTGGATTTAT 190 |||| || |||||| Sbjct 369 ATTCATGAATTTAT 382 >seq124878 Length=475 Score = 73.4 bits (80), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 48 CTTTGCTCGA-ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAG 106 || |||||| |||||||| || || |||| | |||||| | ||| |||| || | Sbjct 196 CTATGCTCGGTATACATTAGCAGGGGATAACATTATAGGATTTT-GGTCATATTACGTTG 138 Query 107 GTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGT 166 | | |||| || |||||||| || | ||| |||| |||| | ||||| || | Sbjct 137 GCCTTCAGGATCGGA-GTAATGATTAACAAGGACAGTCAGGGGCATTCGTATTTCATATT 79 Query 167 CAAAGGTGAAATTCTTGGATTTAT 190 |||||||||||||||||||||||| Sbjct 78 CAAAGGTGAAATTCTTGGATTTAT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510466467200