Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq160254 118 2e-24 seq111675 107 4e-21 seq165289 98.7 2e-18 seq83070 98.7 2e-18 seq241514 96.9 6e-18 seq6234 84.2 4e-14 seq273532 82.4 1e-13 seq288250 80.6 5e-13 seq200792 78.8 2e-12 seq246708 77.0 6e-12 seq234930 77.0 6e-12 seq157766 77.0 6e-12 seq61376 77.0 6e-12 seq53726 75.2 2e-11 >seq160254 Length=981 Score = 118 bits (130), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| || || ||| ||||| |||||| || | ||| | ||| Sbjct 175 GTGGATACCTAGGCACCTAGAGACGAGGAAGGGTGTAGTAATCGATGAAATGCTTCAGGG 234 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| ||| | | | |||||| ||||| |||||| ||| |||| ||| | | Sbjct 235 AGTTG--AAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAAC 286 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||| |||||||| ||| || | |||| || ||| |||||| |||||||||| |||| Sbjct 287 --TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAATTGAAACATCTTAGTA 343 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| ||| ||||||||| ||||| ||||||| |||||||| ||| Sbjct 344 GCCAGAGGAAAAGAAAGCAAAAGAGATTCCCGTAGTAGCGGCGAGCAAAATGGGAGCAGC 403 Query 250 CT 251 || Sbjct 404 CT 405 >seq111675 Length=476 Score = 107 bits (118), Expect = 4e-21 Identities = 124/164 (76%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| |||||| ||| |||| |||| | ||| |||||||| | | Sbjct 19 GATCCGGAGATTCCCGAATAGGGCAACCT-----TTTGA---ACTGC-TGCTGAATCCGT 69 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | ||| || ||| ||||||||||||||||| |||||| ||||||||||| | Sbjct 70 GGGCAGGCAGGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGC 129 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| ||||||| ||||||||| ||||| Sbjct 130 AAAAGCGATTCCCGTAGTAGCGGCGAGCAAAATGGGATCAGCCT 173 >seq165289 Length=618 Score = 98.7 bits (108), Expect = 2e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || |||| |||||||||||| |||| |||||| | Sbjct 408 TGCTGAATCCATGGGCAGGCAAGAGAGAACCAGGCGAACTGAAAGATCTTAGTAGCCAGA 467 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||| ||| | ||||||| ||||| |||| ||||||||||| Sbjct 468 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGGGCGAAATGGGA 516 >seq83070 Length=3691 Score = 98.7 bits (108), Expect = 2e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAAA-GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| |||| ||||| | ||| ||||||||||||||||| ||||| | | Sbjct 1677 TGCTGAATCCATGGGTAGGCAAAAGACAACCTGGCGAACTGAAACATCTTAGTAGTTAGA 1736 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||| ||| | |||||| ||||| || ||||||||||||| Sbjct 1737 GGAAAAGAAAGCAAAAACGTTTCCCATAGTAGCGGTGAGCGAAATGGGA 1785 >seq241514 Length=1285 Score = 96.9 bits (106), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || | | ||||| ||||||| ||| | ||| | | Sbjct 262 GGTGGATACCTAGGCACCCAGAGACAAGGAAGGGCGTAGTAATCGACGAAATGCTTCTAG 321 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||| || ||||| ||||| |||||||| |||| Sbjct 322 GAGTT-GAAAATAAGCATAGATTCGGAGATTCCCGAAGAGGGAAACCT-----TTTGA-- 373 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| |||||||| |||||||| ||| Sbjct 374 -ACTGC-TGCTGAATCCATGGGAAGGCAAGAGACAACCTGGCGAACTAAAACATCTTAGT 431 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATG 241 || ||||||||||| ||| | ||||| | ||||| ||||||||||||| Sbjct 432 AGACAGAGGAAAAGAAAGCAAAAGTGATTCTCGTAGTAGCGGCGAGCGAAATG 484 >seq6234 Length=1301 Score = 84.2 bits (92), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 146 CATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG--GAAAAG 202 ||| || |||||| || ||| ||||||||||||||||| |||||| ||| |||||| Sbjct 1 CATGGGCATGCAAGAGACAACCAGGCGAACTGAAACATCTTAGTAGC--CAGGAGAAAAG 58 Query 203 AAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||| ||| | ||||||| ||||| ||||||| |||| ||| ||||| Sbjct 59 AAAACAAAAGTGATTCCCGTAGTAGCGGCGAGCAAAATCGGAGCAGCCT 107 >seq273532 Length=5488 Score = 82.4 bits (90), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 34 CGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCC 93 ||| ||||| ||||||| | ||| | ||| || ||||| | ||| | | | ||| | Sbjct 4767 CGAGGAAGGGCGTAGTAATTGACGAAATGCTTCGAGGAGTT-GAAAATAAGCATAGATTC 4709 Query 94 GCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTA 153 | ||| || ||||| ||| |||| ||| | | | || ||||| ||| |||| Sbjct 4708 GGAGAGTTTCGAATAGGGCAACC------TTTCGAACTGT---TGTTGAATCCATGGGTA 4658 Query 154 TGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCG 212 |||| || ||| || |||||||||||| | ||||| |||||||||| ||| | Sbjct 4657 GGCAAGAGACAACCTGGTGAACTGAAACATGTTAGTAGTCAGTGGAAAAGAAAGCAAAAG 4598 Query 213 AGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | || || ||||| | |||||||||||||| ||||| Sbjct 4597 TG-TTTCCGTAGTAGCGACGAGCGAAATGGGAGCAGCCT 4560 >seq288250 Length=3559 Score = 80.6 bits (88), Expect = 5e-13 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| ||| || | |||| || || ||| ||||| ||||||| |||||| | Sbjct 1542 TGTTGAATCCATGGGAAGGCAAGAGACAAACTGGCAAACTGTAACATCTTAGTAGCCAGA 1483 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | || |||| |||||||||||| ||||||||| ||||| Sbjct 1482 GGAAAAGAAAGCAAAAGTGA-CCCCATAGTAGTGGCGAGTGAAATGGGAGCAGCCT 1428 >seq200792 Length=10112 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/113 (76%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 140 TGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 ||||| ||| || | | || || ||| || || |||||||||| |||||| | || Sbjct 7444 TGAATCCATGGGCAGGAAAGAGACAACCTGGAAAATTGAAACATCTTAGTAGCCAGAAGA 7503 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||| ||| | |||||| |||||||||||||||||||||| ||||| Sbjct 7504 AAAGAAAGCAAAAGTGATTCCTGTAGTAGTGGCGAGCGAAATGGGAGTAGCCT 7556 >seq246708 Length=6390 Score = 77.0 bits (84), Expect = 6e-12 Identities = 161/236 (68%), Gaps = 13/236 (6%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| || | | || ||| ||||| ||||||| ||| | ||| | | Sbjct 5225 GGTGGATACCTAGGTCCT-AGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTTGAG 5283 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| ||||| || || |||| | Sbjct 5284 GAGTT-GAAAATAAGCATAGATCCGTAGATTCTCGAATAGGCAA--------CTTTTCGA 5334 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 || |||||||| ||| || | ||| || ||| ||||||||||||||||| | | Sbjct 5335 ACTTC--TGCTGAATCCATGGGCAGACAAGAGATAACCTGGCGAACTGAAACATCTTACT 5392 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||| ||| ||| | |||||| ||||| || |||| |||||||| Sbjct 5393 AGCCAGAGGAAAACAAAGCAAAAGCAATTCCCGTAGTAGCGGTGAGCAAAATGGGA 5448 >seq234930 Length=9322 Score = 77.0 bits (84), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 29 ACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTT 88 |||| || ||||| |||| | | ||| | ||| |||||||| | ||| | | | Sbjct 3915 ACAGATGAGGAAGGGCGTATCAATTCACGAAATGCTTCGGGGAGTT-GAAAATAAGCATA 3857 Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||| | ||||| || ||| ||||||| ||| | | ||| ||||||| |||| Sbjct 3856 GATCAGGAGATTCCCAAATAAGGAAACC------TTTAGAAC--TGC-TGCTGAACACAT 3806 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | | || || ||| ||| ||||||||||||| ||| || ||||||| ||| | Sbjct 3805 GGGAAGGAAATAGATAACTTGGCAAACTGAAACATCTTAGTGGCCAGAGGAAAATAAAGC 3746 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || | ||||| || | ||| | ||||| ||| |||| Sbjct 3745 AAAAGTGATTCTCATAATAGCGACGAGCAAAAAGGGA 3709 >seq157766 Length=2582 Score = 77.0 bits (84), Expect = 6e-12 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| |||| |||| || |||| ||||||||||| |||| ||||| | Sbjct 1588 TGCTGAATCCATTGGTAGGCAAGAGAGAACCAAGCGAACTGAAAGATCTTTGTAGCCAAA 1529 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 | |||||||| || | ||||||| || | |||| ||||||||||| Sbjct 1528 GAAAAAGAAAGAAAAAGTGATTCCCGTAGGAAGGGCGGGCGAAATGGGA 1480 >seq61376 Length=1270 Score = 77.0 bits (84), Expect = 6e-12 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| ||| || | |||| || |||| |||||||||||| |||| ||||| | Sbjct 912 TGTTGAATCCATGGGCAGGCAAGAGAGAACCAGGCGAACTGAAAGATCTTTGTAGCCAAA 971 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||| || | ||||||| |||| |||| ||||||||||| Sbjct 972 GGAAAAGAAAGAAAAAGTGATTCCCGTAGTAACGGCG-GCGAAATGGGA 1019 >seq53726 Length=18615 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| ||| |||| |||| || |||| || ||||||||| |||| |||||||| | Sbjct 10497 TGTTGAATCCATGGGTAGGCAATAGAGAACCAGGTGAACTGAAAGATCTTAGTAGCTGGA 10438 Query 196 GGAAAAGAAATCAACCGAGATTC 218 |||||||||| || ||||||| Sbjct 10437 GGAAAAGAAAGAAAAAGAGATTC 10415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915560490880