Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq254282 104 5e-20 seq195500 104 5e-20 seq215068 95.1 3e-17 seq257560 93.3 9e-17 seq126848 87.8 4e-15 seq246708 86.0 1e-14 seq234167 86.0 1e-14 seq249906 78.8 2e-12 seq203364 78.8 2e-12 seq249600 77.0 7e-12 seq185120 77.0 7e-12 >seq254282 Length=1581 Score = 104 bits (114), Expect = 5e-20 Identities = 127/172 (74%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| ||| || Sbjct 327 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 385 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 386 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAA 445 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 | | | ||||| || | ||||||| || | |||| ||| | | || ||| Sbjct 446 TCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGT 497 >seq195500 Length=555 Score = 104 bits (114), Expect = 5e-20 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| ||| || || | | ||| |||| || Sbjct 280 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCAAGCGGCATTGCTCCGTCAGGCTT 222 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||||||||||| ||||||||| ||| ||||||||||| Sbjct 221 TTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTCTGGGCCGTGTCTCAG 162 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 161 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 102 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 101 GCCTCACCAACTAGCTAAT 83 >seq215068 Length=5257 Score = 95.1 bits (104), Expect = 3e-17 Identities = 158/228 (69%), Gaps = 19/228 (8%) Strand=Plus/Minus Query 3 CTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGG 62 |||||||||| |||||||||||||||||||| || ||| || | | Sbjct 1488 CTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCATCA------------TTG 1441 Query 63 AAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTA 122 | || ||| || |||| |||| || | |||| | | ||| ||| || || | Sbjct 1440 A-----TTCTTCTCTGGGAAAAATAGTTCACGAACCGTGGG-CATTCTACCTCCATGCGA 1387 Query 123 CTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGA 182 | | ||| |||| || || |||||| || ||||| |||| ||||||||||||||| Sbjct 1386 CATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCC-CACTACTGCCTCCCGTAGGA 1328 Query 183 GTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 || | || ||||||||||| ||||||| | || | ||||||| |||| Sbjct 1327 GTCTTGATCGTGTCTCAGTCCCAATGTAGCTGATCATCCTCTCGGAAC 1280 >seq257560 Length=520 Score = 93.3 bits (102), Expect = 9e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || |||||| | ||||||||||||||||||| ||| ||| Sbjct 21 TCAGGCTTTCGCCCATTGCGGAAAATTCCTGATTGCTGCCTCCCGTAGGAGTCTGGGCCG 80 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| ||| ||||| || | |||||||||| Sbjct 81 TGTATCAGTCCCAGTGTGGCTGATCATCCTCTCAGA 116 >seq126848 Length=563 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| ||||| |||||||| ||||||||||||| |||||||| ||| || Sbjct 455 TCAGGCTTTCGCTCATTGCGGAATATTCCCCACTGCTGCCTCCGGTAGGAGTCTGGGCCA 514 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||| ||||| || | ||||||| || Sbjct 515 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 550 >seq246708 Length=6390 Score = 86.0 bits (94), Expect = 1e-14 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | | || | ||||| |||||||| | | ||| |||| | Sbjct 1985 AAAAGAAGTTCACGACCTGTGGG-CCTTCTACCTTCACGTGGCATTGCTCCGTCAGGATT 1927 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||| ||| ||| || |||||||| Sbjct 1926 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGGCCATGTCTCAG 1867 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 | | | | ||| || | | ||||| ||||| Sbjct 1866 TCCTAGTATGGTTGATCATTCTCTC-GAACC 1837 >seq234167 Length=15755 Score = 86.0 bits (94), Expect = 1e-14 Identities = 156/226 (69%), Gaps = 18/226 (8%) Strand=Plus/Plus Query 3 CTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGG 62 |||||||||| |||||||||||||||||||| || ||| || || || Sbjct 464 CTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAG------ACA----CCGTCAT-TGC 512 Query 63 AAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTA 122 || ||| | | |||||||||| || | ||| | ||||| ||| ||| | Sbjct 513 ------TTCTTCTCCAAGAAAAGAAGTTCACGACTCGTGGG-CCTTCTACCTCCACTCAG 565 Query 123 CTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGA 182 | | ||| ||| || ||| ||||| || ||||| ||||||||||||||| |||| Sbjct 566 CATTGCTCCATCAAGCTTTCGCTCATTGCGAAAAATTCCCCACTGCTGCCTCCCGCAGGA 625 Query 183 GTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || ||| |||||||||| | ||| ||||| | | ||||||| || Sbjct 626 GTCTGGGCCGTGTCTCAATCCCAGTGTGGCTAATCATCCTCTCGGA 671 >seq249906 Length=3078 Score = 78.8 bits (86), Expect = 2e-12 Identities = 97/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || |||| | || ||||| ||||| || | | ||| |||| || Sbjct 671 AAAAGAAGTTCACGATCCAT-GAGCCTTCTACCTTCGCGAGATATTGCTCCGTCAGGCTT 613 Query 141 TCG-TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 | | | ||||| || |||||||||||||||||| | || ||| ||| |||||||||| Sbjct 612 TTGCTACATTGTGAAAAATTCCTCACTGCTGCCTCTCATAAGAGCCTGGGCCGTGTCTCA 553 Query 200 GTTCCAATGT 209 || ||| ||| Sbjct 552 GTCCCAGTGT 543 >seq203364 Length=1248 Score = 78.8 bits (86), Expect = 2e-12 Identities = 97/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || |||| | || ||||| ||||| || | | ||| |||| || Sbjct 578 AAAAGAAGTTCACGATCCAT-GAGCCTTCTACCTTCGCGAGATATTGCTCCGTCAGGCTT 636 Query 141 TCG-TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 | | | ||||| || |||||||||||||||||| | || ||| ||| |||||||||| Sbjct 637 TTGCTACATTGTGAAAAATTCCTCACTGCTGCCTCTCATAAGAGCCTGGGCCGTGTCTCA 696 Query 200 GTTCCAATGT 209 || ||| ||| Sbjct 697 GTCCCAGTGT 706 >seq249600 Length=758 Score = 77.0 bits (84), Expect = 7e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 624 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 683 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||||||| || || ||||| || ||||||||||| | | ||||| Sbjct 684 CTGCTGCC-CCTGTCGGAGTCCGGGTCGTGTCTCAGTCCTAGTGTGG 729 >seq185120 Length=1973 Score = 77.0 bits (84), Expect = 7e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || |||| || |||||| ||| ||||| ||||| ||| ||||| ||||| Sbjct 1869 GCTGGATCGGACTTTCTCCCATTGTTCAAGATTCCCCACTGTAGCCCCCCGTGGGAGTCC 1928 Query 187 GGACCGTGTCTCAGTTCCAATGTGG 211 || |||||||||||||||| ||||| Sbjct 1929 GGGCCGTGTCTCAGTTCCATTGTGG 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065495484160