Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq67946 183 2e-41 seq276686 84.2 2e-11 >seq67946 Length=21248 Score = 183 bits (202), Expect = 2e-41 Identities = 581/885 (66%), Gaps = 18/885 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 3121 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 3179 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || |||||||||| || || |||||| | |||| || | | ||||||| Sbjct 3180 TGGCATCTTTCTGGACGGCAGAAGAAGTCGATCTCTCCACCGATACTCGTCACTGGGAAA 3239 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| |||||||| | ||||| | || || |||||||| || | Sbjct 3240 ACCTAACATCCGGTGAAAGGCATTTCATCACTCATGTTCTTGCCTTTTTTGCCGCCTCAG 3299 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 |||| ||||| ||||| | ||||| ||| | | | || || || || | ||| Sbjct 3300 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGATGTCCAGGTTGCCGAG 3358 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 3359 GCTCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 3418 Query 61351 GTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | || | || ||||||||| ||| | | || || | | | ||||||| ||| || Sbjct 3419 TTGCTGTTGGAGTCGTACATCAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAAT 3477 Query 61410 CGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 ||||| || || | | |||| ||| ||| | |||||| | ||||||| | || Sbjct 3478 TGAGACAATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGGT 3536 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | || || | || || ||| |||| ||||| || || || | || ||| Sbjct 3537 ----CCGAAACTTTCGCGGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTC 3592 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||| || | || ||||||||||| ||||| || | ||||| || | ||| Sbjct 3593 AGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACC 3652 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 ||| |||||||| || ||| | ||||| || |||| ||||||||||| |||||| Sbjct 3653 TTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTT 3712 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 | || | | || || | | |||||||| || | | |||||| || Sbjct 3713 TACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTGTTGCAGAT 3769 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || || ||| ||| || || ||| ||| | || | || | || ||| Sbjct 3770 GCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGAATG 3829 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 ||| | | | ||| | || || || ||||| || ||| | |||||| | |||| Sbjct 3830 AATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGGATGCTTTG 3889 Query 61828 GG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCT 61886 || |||| | ||| || ||| | | || ||||| |||| ||||| ||||| | Sbjct 3890 GGTTATG-ACAAGATGTACAATGCTCAGAATCCATTCGATTGGATGGAGCTGATTAGTTT 3948 Query 61887 GGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 3949 ACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 3993 >seq276686 Length=16051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 ||||| ||||| ||| ||||||||| ||||| |||| || ||||||||| ||| || Sbjct 3949 TAGATATTGGATGTGTATGGTTCAAAGCATTCATTGTTTCCAAGAATTTGGCTAGTTGAA 4008 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||||||| ||||| || | | |||||||| Sbjct 4009 GCAGTTGGCATTGGAGCTACAAGAAGTGAGTTTC 4042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396069911595200