Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19]
14,854 sequences; 705,934,411 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq14854 141 1e-31
seq62 141 1e-31
seq135 138 2e-30
seq298 113 6e-23
seq136 107 3e-21
seq118 93.3 6e-17
seq82 91.5 2e-16
seq547 86.0 9e-15
seq134 86.0 9e-15
seq910 84.2 3e-14
seq190 82.4 1e-13
seq5 82.4 1e-13
seq608 80.6 4e-13
seq8 75.2 2e-11
>seq14854
Length=155296
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 107351 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 107293
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 107292 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 107246
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 107245 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 107192
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 107191 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 107132
Query 246 GTA 248
|||
Sbjct 107131 GTA 107129
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 133683 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 133741
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 133742 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 133788
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 133789 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 133842
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 133843 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 133902
Query 246 GTA 248
|||
Sbjct 133903 GTA 133905
>seq62
Length=2166112
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 902061 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 902119
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 902120 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 902166
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 902167 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 902220
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 902221 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 902280
Query 246 GTA 248
|||
Sbjct 902281 GTA 902283
Score = 114 bits (126), Expect = 2e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 902663 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 902722
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 902723 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 902770
>seq135
Length=1498384
Score = 138 bits (152), Expect = 2e-30
Identities = 178/243 (73%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||| | ||||| ||| ||| | ||
Sbjct 272523 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATTGTGTTACCA-CTTAGCAGAGTCC 272581
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 272582 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 272639
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||| ||||||| |||| ||||||||||| |||||
Sbjct 272640 T--------AGGAGAG-CACCCCTTCTCCTGAAGTTATGGGGTCATTTTGCCGAGTTCCT 272690
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 272691 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 272750
Query 246 GTA 248
|||
Sbjct 272751 GTA 272753
>seq298
Length=802456
Score = 113 bits (124), Expect = 6e-23
Identities = 173/245 (71%), Gaps = 24/245 (10%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| || ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 17896 CCTTCCGGCAGTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 17838
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||| | | || || |||||||| |
Sbjct 17837 TGTGTTTTTGGTAAACAGTCACCTGAGCCTGGTCACTGCGACC---------------CT 17793
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 17792 T--TTTGTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTTCT 17737
Query 186 TAACCACAGTT--CACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243
|| | |||| | |||| | ||| ||||||||||||| |||| |||||| |||
Sbjct 17736 TAGAGAGAGTTGTCTCCCG--CCCCTAGGTATTCTCTACCTACCCACATGTGTCAATTTC 17679
Query 244 CGGTA 248
||||
Sbjct 17678 GGGTA 17674
>seq136
Length=1492581
Score = 107 bits (118), Expect = 3e-21
Identities = 165/237 (70%), Gaps = 20/237 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||| ||||||||| || |||||| | ||||| ||| || ||||
Sbjct 500884 CCTTCCGGCACTGGGAAGGCGTCAGCCCCCATACATGGTCTTACAA-CTTTGCGGAGACC 500826
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || ||||||| |
Sbjct 500825 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCATTGCGACC-------------CTTT 500779
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || | | |||||||||||||||||||||||||||| |||||||||| || |
Sbjct 500778 TTGT------GATGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTTCA 500725
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|| | |||| | || | ||| ||||||||||||| |||||| |||||||||
Sbjct 500724 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTT 500668
>seq118
Length=1616611
Score = 93.3 bits (102), Expect = 6e-17
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||| ||||||||||||| |||||||||| |||||| || |||| | |
Sbjct 156210 GCACCCCTTCTCTCGAAGTTACGGGGTAATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 156151
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237
| |||| |||||| |||||| || ||||||||||
Sbjct 156150 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTC 156115
>seq82
Length=1932198
Score = 91.5 bits (100), Expect = 2e-16
Identities = 171/244 (70%), Gaps = 23/244 (9%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||||||| |||||||||| ||||| ||||| | |||| | ||| ||||
Sbjct 106020 CCTTCCATCACTGGGCAGGCGTTAGTCCCCATACACAGTTTTAC-GACTTTATGGAGACC 105962
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||| || ||||||||| || | | || |||||| | | | | |
Sbjct 105961 TGTGTTGTTGGTAAACAGTAGCC-----CAAGCCT----GACCACTGCAATCCC----CT 105915
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || |||||||||||| |||||||||||||| ||||| |||| |||||
Sbjct 105914 TTGTG----AGGAG--GCACCCCTTCTCTCGAAGTTACGGGGCTATTTTTCCGAGTTCCT 105861
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGGTTTAC 244
|| || |||| | | || ||| ||||| | || |||| |||| ||||| ||||||
Sbjct 105860 TAGACAGAGTTGTCTCACACCCCTAGGTATT-TATA-CTGACCCACATGTGTTGGTTTAG 105803
Query 245 GGTA 248
||||
Sbjct 105802 GGTA 105799
>seq547
Length=312868
Score = 86.0 bits (94), Expect = 9e-15
Identities = 82/108 (76%), Gaps = 14/108 (13%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 220249 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA------------- 220295
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | | ||||||||||||| |||||||||||||||| ||||
Sbjct 220296 -GAGAGAGTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 220342
>seq134
Length=1515740
Score = 86.0 bits (94), Expect = 9e-15
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||| | ||||||| |||| || |||| || ||||||| | |||| | |
Sbjct 167339 GCACCCCTTCTCTCAAAGTTACTGGGCTATATTGCTGAGTTCCTTAGAGAGAGTTGTCGC 167280
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||||||||| ||||||||||||||| ||||
Sbjct 167279 GTGCCCCTAGGTATTCTCTACCTACTCACCTGTGTCGGTTTCAGGTA 167233
Score = 80.6 bits (88), Expect = 4e-13
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||| | ||||||| |||| || |||| || ||||||| | || | | |
Sbjct 136980 GCACCCCTTCTCTCAAAGTTACTGGGCTATATTGCTGAGTTCCTTAGAGAAAGCTGTCGC 136921
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||||||||| ||||||||||||||| ||||
Sbjct 136920 GTGCCCCTAGGTATTCTCTACCTACTCACCTGTGTCGGTTTTAGGTA 136874
>seq910
Length=54785
Score = 84.2 bits (92), Expect = 3e-14
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||||||||||||||||| |||||||| || |||||| || |||| | |
Sbjct 3960 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCTGAGTTCCTTCGACATGGTTCTCTC 4019
Query 202 GAACGCCTTAGTATTCTCTACCTG 225
| |||| |||||| |||||| ||
Sbjct 4020 AAGCGCCCTAGTATACTCTACTTG 4043
>seq190
Length=1182647
Score = 82.4 bits (90), Expect = 1e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||||||||| |||| ||||| | | || |||| | |||| |
Sbjct 185826 GGCACCCCTTCTCCCGAAGTTACAGGGCTATTTTTCTAAGTTTCTTAGAGAGAGTTGTCT 185885
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| || ||| ||||||||||||| | |||||||| ||||| ||||
Sbjct 185886 TGCACCCCTAGGTATTCTCTACCTACCAACCTGTGTTGGTTTTGGGTA 185933
>seq5
Length=4371776
Score = 82.4 bits (90), Expect = 1e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||| ||||||||| || ||| || ||||||| | |||| ||
Sbjct 3485123 GGCACCCCTTCTCCCGACATTACGGGGCTATCTTGTTGAGTTCCTTAGAGAGAGTTGTCC 3485064
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| || ||| ||||| |||||| | ||| |||||| ||||| ||||
Sbjct 3485063 CACACTCCTAGGTATTATCTACCAGCCCAACTGTGTTGGTTTCAGGTA 3485016
>seq608
Length=253366
Score = 80.6 bits (88), Expect = 4e-13
Identities = 73/91 (80%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| | ||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 171716 CCTTCCAGCCCCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 171774
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTA 96
|||||||||| |||||||||||| | | |||
Sbjct 171775 TGTGTTTTTAATAAACAGTCGCTACTCGCTA 171805
>seq8
Length=4063183
Score = 75.2 bits (82), Expect = 2e-11
Identities = 76/99 (77%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 144 ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA 203
|||| ||||| ||||||||||| ||||||| ||| |||||| || |||| | | |
Sbjct 1617782 ACCCTTTCTCATCAAGTTACGGGGTCATTTTGTCGAGTTCCTTCGACATGGTTCTCTCAA 1617723
Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|||| |||||| || ||| || ||||| |||||||||
Sbjct 1617722 GCGCCCTAGTATACTATACTTGTTCACCTCTGTCGGTTT 1617684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694300077142
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