Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19]
14,854 sequences; 705,934,411 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq14854 87.8 2e-15
seq62 87.8 2e-15
seq135 86.0 6e-15
seq608 80.6 3e-13
seq298 75.2 1e-11
seq136 75.2 1e-11
>seq14854
Length=155296
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 107250 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 107309
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 107310 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 107355
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 133784 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 133725
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 133724 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 133679
>seq62
Length=2166112
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 902162 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 902103
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 902102 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 902057
>seq135
Length=1498384
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || |
Sbjct 272616 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACAAT 272557
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 272556 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 272522
>seq608
Length=253366
Score = 80.6 bits (88), Expect = 3e-13
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||||||||||||||| ||||||| || | || || |||||| || |||
Sbjct 171796 GCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGA 171737
Query 128 CGCCTGCCCGGTGCCGGAAGGT 149
| ||||||||| || |||||||
Sbjct 171736 CACCTGCCCGGGGCTGGAAGGT 171715
>seq298
Length=802456
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || ||||||| | ||||||||| |||||||||| ||| ||||| ||
Sbjct 17795 GGTCGCAGTGACCAGGCTCAGGTGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 17854
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| ||||||||||| ||
Sbjct 17855 AAGACCATGTATGGGGGCTGACGCCTGCCCACTGCCGGAAGGTCAA 17900
>seq136
Length=1492581
Score = 75.2 bits (82), Expect = 1e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116
|||||||| ||||||||||| |||||||||| ||| ||||| | ||| | ||
Sbjct 500793 ACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTTGTAAGACCATGT 500852
Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|| ||| |||||||| ||| |||||||||||| ||
Sbjct 500853 ATGGGGGCTGACGCCTTCCCAGTGCCGGAAGGTCAA 500888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476731389374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |