Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19]
14,854 sequences; 705,934,411 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq14854 107 2e-21
seq354 107 2e-21
seq62 107 2e-21
seq150 91.5 2e-16
seq298 89.7 6e-16
seq608 84.2 2e-14
seq82 80.6 3e-13
>seq14854
Length=155296
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 107570 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 107511
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 107510 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 107452
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 107451 ACAAGGAATTTCGCTACCTTAGGACCGTTA 107422
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 133464 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 133523
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 133524 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 133582
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 133583 ACAAGGAATTTCGCTACCTTAGGACCGTTA 133612
>seq354
Length=633104
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 20061 GGGTCTTTCTGTCCAGGTGCAGGTAGTCTGCATCTTCACAGACATGTCTATTTCACCGAG 20002
Query 85 C-TCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| |||| ||||||| ||| || ||| ||| ||||||||||||||||
Sbjct 20001 CCTCACTCC-GAGACAGTGCCTATATCGTTACGCCTTTCATGCGGGTCGGAACTTACCCG 19943
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 19942 ACAAGGAATTTCGCTACCTTAGGACCGTTA 19913
>seq62
Length=2166112
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 901842 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 901901
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 901902 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 901960
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 901961 ACAAGGAATTTCGCTACCTTAGGACCGTTA 901990
>seq150
Length=1428744
Score = 91.5 bits (100), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879934 ACGCCTTTCGTACGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 879993
>seq298
Length=802456
Score = 89.7 bits (98), Expect = 6e-16
Identities = 109/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | || |||| || |||||||||| || | | |||||| |||
Sbjct 18115 GGGTCTTTCTGTCCAAGTGCAGGTAGTCCGCATCTTCACAGACATGATTATTTCAACGAG 18056
Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | |||||||| ||| || ||| ||| | |||||| | ||| |
Sbjct 18055 C-CTCTCTCTGAGACAGTGCCCAGATCGTTACGCCTTTCTTGCGGATCGGAAATCACCTG 17997
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 17996 ACAAGGAATTTCGCTACCTTAGGACCGTTA 17967
>seq608
Length=253366
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 171595 TACACCATTCGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGACAGTT 171654
Query 173 A 173
|
Sbjct 171655 A 171655
>seq82
Length=1932198
Score = 80.6 bits (88), Expect = 3e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||| |||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 106144 TTCGTGCGGGTCGGAAGTTACCCGATAAGGAATTTCGCTACCTTAGGACCATTA 106091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547121258946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |