Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq306 392 1e-106 >seq306 Length=773822 Score = 392 bits (434), Expect = 1e-106 Identities = 316/380 (83%), Gaps = 15/380 (4%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||||||||||||||| |||||||| || ||||||||| |||||||||| || ||||| Sbjct 589894 GCTCCAAAGAGGAAAAGACCAAGGCAGGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGG 589953 Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386 |||||||||||||| |||||||| ||||||||||| |||||||||||| | Sbjct 589954 AGCAGCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGCTA 590013 Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446 ||||||| ||| ||||||||||||||||||||||||||| | || |||||||| ||||| Sbjct 590014 GAGGTTTTTTCACCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTTTCT 590073 Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAG 506 ||||||||||| ||| ||||| |||||||||||||| ||| |||||||||||||||| Sbjct 590074 TTATATGATTTAAGTGGTTCTGCACAAAGTTTGCCGGCGGTTGTAGATCCGGTACCGGAG 590133 Query 507 CCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAG 566 ||||||||| | |||||||| ||||||||||| |||||||||||||||| |||||| Sbjct 590134 CCGATGAAGATGGAATCTGACCTCAAGAGGAGGTCTGATGAATCTGAATT---TATGGAT 590190 Query 567 AGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGT 626 ||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || | | Sbjct 590191 AGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGATAAT 590247 Query 627 AGTATTCATGAGGTTGCTGC 646 ||||||| ||||| || ||| Sbjct 590248 AGTATTCGTGAGGATGTTGC 590267 Score = 246 bits (272), Expect = 1e-62 Identities = 204/245 (83%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98 ||||| | |||||||| |||| || ||||||||||| |||||||||||||||||||| Sbjct 589553 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCTAAAGCTTCTTCATCTAAC 589612 Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151 ||||||||||| ||||||||||||||||||||| | | ||| ||| ||||| || Sbjct 589613 CCTGAAGAGCTTGAGATTGAGATTGCTGAAGTTTTGTATGGATTGATGACTCAGTCA-CA 589671 Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211 |||||||| |||||||| ||||| ||| || || ||||||||||||| |||||| Sbjct 589672 AGGACCTTCAAAAAAAGA---AAGTG-GACCAA--ATGATACAAGAGAAGT---TAATAA 589722 Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271 ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| Sbjct 589723 CAGATCCAGAGTTTCATCTCCAGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 589782 Query 272 TGCTG 276 || || Sbjct 589783 TGTTG 589787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1964499028252