Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19]
14,854 sequences; 705,934,411 total letters
Query= AAMG01001210.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
seq306 392 1e-106
>seq306
Length=773822
Score = 392 bits (434), Expect = 1e-106
Identities = 316/380 (83%), Gaps = 15/380 (4%)
Strand=Plus/Plus
Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335
||||||||||||||||| |||||||| || ||||||||| |||||||||| || |||||
Sbjct 589894 GCTCCAAAGAGGAAAAGACCAAGGCAGGTCTTGGAAAATCCTGGAGGATTTAGTGTAAGG 589953
Query 336 AGCAGCCCCATTTCG---------GCTAAAGTGGAGATGGATCAAACAACAATGAAGATG 386
|||||||||||||| |||||||| ||||||||||| |||||||||||| |
Sbjct 589954 AGCAGCCCCATTTCATCTTCTACAGCTAAAGTTGAGATGGATCAGACAACAATGAAGCTA 590013
Query 387 GAGGTTTCTTCTCCTAATTTGGAGAAGACCCCACAATCTACAGCGGAAAATGGAGTTTCC 446
||||||| ||| ||||||||||||||||||||||||||| | || |||||||| |||||
Sbjct 590014 GAGGTTTTTTCACCTAATTTGGAGAAGACCCCACAATCTGCTGCTGAAAATGGTGTTTCT 590073
Query 447 TTATATGATTTGGGTGCTTCTGTACAAAGTTTGCCGGTGGTAACAGATCCGGTACCGGAG 506
||||||||||| ||| ||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 590074 TTATATGATTTAAGTGGTTCTGCACAAAGTTTGCCGGCGGTTGTAGATCCGGTACCGGAG 590133
Query 507 CCGATGAAGGTTGAATCTGAGGTCAAGAGGAGGCCTGATGAATCTGAATTTACTATGGAG 566
||||||||| | |||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 590134 CCGATGAAGATGGAATCTGACCTCAAGAGGAGGTCTGATGAATCTGAATT---TATGGAT 590190
Query 567 AGTAAAGTGGAAGTGAATTCACCTAAGAAGGATACTTCTACTGTTGTTGCAGCGGAGAGT 626
||||| | |||||||||||| || |||| ||| ||| |||| ||| | || || | |
Sbjct 590191 AGTAAGGAGGAAGTGAATTCCCCAAAGAGGGAATCTTTTACT-TTG--GGAGTAGATAAT 590247
Query 627 AGTATTCATGAGGTTGCTGC 646
||||||| ||||| || |||
Sbjct 590248 AGTATTCGTGAGGATGTTGC 590267
Score = 246 bits (272), Expect = 1e-62
Identities = 204/245 (83%), Gaps = 17/245 (7%)
Strand=Plus/Plus
Query 39 AAGCCACACGGACAAAAAAGGCCACCAGCAAAGTCACCACCTAAAGCTTCTTCATCTAAT 98
||||| | |||||||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 589553 AAGCCTAATGGACAAAAGCGGCCGCCGGCAAAGTCACCTCCTAAAGCTTCTTCATCTAAC 589612
Query 99 CCTGAAGAGCTGGAGATTGAGATTGCTGAAGTTCTTTTTGGTTTG-------AGTCATCA 151
||||||||||| ||||||||||||||||||||| | | ||| ||| ||||| ||
Sbjct 589613 CCTGAAGAGCTTGAGATTGAGATTGCTGAAGTTTTGTATGGATTGATGACTCAGTCA-CA 589671
Query 152 TGGACCTTCCAAAAAAGATACAAGTGTGACAAATGATAATACAAGAGAAGTTAATAATAA 211
|||||||| |||||||| ||||| ||| || || ||||||||||||| ||||||
Sbjct 589672 AGGACCTTCAAAAAAAGA---AAGTG-GACCAA--ATGATACAAGAGAAGT---TAATAA 589722
Query 212 CAGATCCAGAGTTTCATCTCCTGTTTCTAATTCTAACTCATCAGCTACTCCTTTATCTGC 271
||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||
Sbjct 589723 CAGATCCAGAGTTTCATCTCCAGCTTCTAATTCAAACTCATCAGCAACTCCTTTATCTGT 589782
Query 272 TGCTG 276
|| ||
Sbjct 589783 TGTTG 589787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1964499028252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |