Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq14854 127 2e-27 seq62 127 2e-27 seq19 127 2e-27 seq178 123 2e-26 seq55 122 7e-26 seq66 113 4e-23 seq479 107 2e-21 seq127 102 7e-20 seq842 100 2e-19 seq298 100 2e-19 seq181 100 2e-19 seq273 96.9 3e-18 seq859 91.5 1e-16 seq172 89.7 4e-16 seq278 82.4 6e-14 seq92 75.2 9e-12 >seq14854 Length=155296 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 103076 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 103017 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 103016 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 102957 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 102956 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 102917 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 137958 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 138017 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 138018 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138077 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 138078 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138117 >seq62 Length=2166112 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 715913 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 715854 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 715853 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 715794 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 715793 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 715754 Score = 87.8 bits (96), Expect = 1e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| |||| ||||||| || ||| || | ||| |||| ||| |||||||| | | Sbjct 788476 TTTTTGGGGTTAGCTCACCTTCGAAGGATTGCGACCCTTTGTCCCGGCCATTGTAGCATG 788417 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||| | ||||||||||||||| ||||||||||||| | Sbjct 788416 TGTGTCGCCCAGGGCATAAGGGGCATTATGACTTGACGTCATCCTCACCTTCCTCCGGCT 788357 Query 156 T 156 | Sbjct 788356 T 788356 >seq19 Length=3257788 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 1890602 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 1890661 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1890662 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1890721 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1890722 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1890761 >seq178 Length=1263331 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 451195 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 451253 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 451254 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 451313 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 451314 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 451353 >seq55 Length=2254777 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || |||| ||||||| ||||||||| Sbjct 1873245 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTATTGGGGTTAGCTCACCCTCGCGG 1873304 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1873305 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1873364 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1873365 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1873404 >seq66 Length=2155310 Score = 113 bits (124), Expect = 4e-23 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| |||||||| ||| | | |||||||| ||| ||||| ||| | | Sbjct 7469 GAGTTGCAGAGAACAATCCGAACTGAGGAAATCTTTCTGG-ATTCGCTCCGCCTTACAGC 7411 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| |||| | |||||||| ||||||| | || ||||||||||||||| Sbjct 7410 CTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGACCAGCCCATAAGGGCCATG 7351 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCC 151 ||||||||||||||||| |||||||||| Sbjct 7350 CGGACTTGACGTCATCCCTACCTTCCTCC 7322 >seq479 Length=406208 Score = 107 bits (118), Expect = 2e-21 Identities = 122/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 232598 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 232540 Query 62 GTTGGCGGCCCTCTGTATGTACCATT-GTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| |||| | ||||| ||| ||||||| |||| |||||||||| || Sbjct 232539 CCTTGCTTCCCATTGTAATTGCCATTTGTAGCACGTGTGTGGCCCAGCCCATAAGGGTCA 232480 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||| |||||||||||||||||| || | |||| Sbjct 232479 TGCGGACTTGACATCATCCCCACCTTCCTCCAGTATATCAC 232439 >seq127 Length=1543856 Score = 102 bits (112), Expect = 7e-20 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 1040320 CCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCATGCGGACTTGACGTCATCCCCA 1040261 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 1040260 CCTTCCTCCAGTATATCAC 1040242 >seq842 Length=77229 Score = 100 bits (110), Expect = 2e-19 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| ||||||| || ||| | ||| |||| ||||||| ||||| || | Sbjct 61153 GAGTTGCAGCCTACAATTCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCACGAG 61094 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| |||||||| | ||||| |||| |||||||| |||| Sbjct 61093 ATCGCGACCCTTTGTCCTAGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCATG 61034 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 | ||||||||||||||| | | ||||||||| || ||| Sbjct 61033 ATGACTTGACGTCATCCTCGCTTTCCTCCGGCTTATCA 60996 >seq298 Length=802456 Score = 100 bits (110), Expect = 2e-19 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||| ||| | || ||| |||| |||||| |||||||| Sbjct 13622 CGAGTTGCAGCCTGCAATCCAAACTTAGG-ACGGTTTTTGGGGTTAGCTTAGCCTCGCGG 13564 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | |||| ||| |||||||| | ||||| |||| |||||||| ||| Sbjct 13563 GATCACAACCCTTTGTCCCGGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCAT 13504 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| | ||||||||||| || |||| Sbjct 13503 GATGACTTGACGTCATCCTCCCCTTCCTCCGGCTTATCAC 13464 Score = 95.1 bits (104), Expect = 1e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||| ||| | ||| |||| |||||| |||||||| Sbjct 4687 CGAGTTGCAGCCTGCAATCCAAACTTAGGACGGGTTTTTGGGGTTAGCTTAGCCTCGCGG 4628 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | |||| ||| |||||||| | ||||| |||| |||||||| ||| Sbjct 4627 GATCACAACCCTTTGTCCCGGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCAT 4568 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| | ||||||||||| || |||| Sbjct 4567 GATGACTTGACGTCATCCTCCCCTTCCTCCGGCTTATCAC 4528 >seq181 Length=1232176 Score = 100 bits (110), Expect = 2e-19 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 148464 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 148406 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || || |||| | |||||||| || | || |||| |||||||||||||| Sbjct 148405 CCTTGCTTTCCATTGTAATTGCCATTGTAGCACATATGTGGCCCAGCCCATAAGGGCCAT 148346 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | || |||||||||||||||||||||||| || | |||| Sbjct 148345 GCGGGCTTGACGTCATCCCCACCTTCCTCAAGTATATCAC 148306 >seq273 Length=876315 Score = 96.9 bits (106), Expect = 3e-18 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| |||| ||||||| |||||||||| | ||| |||| ||| |||||||| | | Sbjct 155128 TTTTTGGGGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCATG 155069 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 || | |||| |||||||| ||||| ||||||||||||||| |||||| |||||| | Sbjct 155068 TGAGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTTCTCCGGCT 155009 Query 156 TGTCAC 161 |||| Sbjct 155008 AATCAC 155003 >seq859 Length=69528 Score = 91.5 bits (100), Expect = 1e-16 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| ||||| | ||| | | | || ||| ||| ||||| || | | Sbjct 14566 CGAGTTGCAGGGAACAATTCAAACTGAGGCAATCGTTTTGG-ATTCGCTCCGCCGTACAG 14624 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | || ||||| ||||||| |||| ||||||||||||||| Sbjct 14625 CCTTGCTTCCCATTGTAATTGCCGTTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCAT 14684 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||||||||||||||||| |||||||| Sbjct 14685 GCGGACTTGACGTCATCCCCATCTTCCTCC 14714 >seq172 Length=1280083 Score = 89.7 bits (98), Expect = 4e-16 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||| ||| | |||||| ||| | | |||| ||| ||| ||||| || | Sbjct 1180760 TCGAGTTACAGGGAAAAATCCGAACTGAGGCAATCTTTTTGG-ATTCGCTCCGTCTTACA 1180702 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | | ||| |||| | |||||||| ||||||| |||| |||||||||||| Sbjct 1180701 GCCTTGTTTCCCATTGTAAATGCCATTGTAGCACGTGTGTGGCCCAGACCATAAGGGCCA 1180642 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCT 149 || |||||||||||||||||||||||||| Sbjct 1180641 TGCGGACTTGACGTCATCCCCACCTTCCT 1180613 >seq278 Length=864930 Score = 82.4 bits (90), Expect = 6e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 643055 GCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 642996 >seq92 Length=1807409 Score = 75.2 bits (82), Expect = 9e-12 Identities = 114/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||| ||| || |||||| | | | || | | ||| || ||||| ||||||| | Sbjct 1733255 GAGTTACAGCCTGCAATCCAAATTGAGGACAAATTTTTAGG--TTAGCCGACCCTCGCTG 1733198 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || |||| ||| | ||||||| ||||||| ||||| ||| || | ||| Sbjct 1733197 AATG-CGACCCTTTGTTCCGATCATTGTAGAACGTGTGTAGCCCAGGACATTAGAGGCAT 1733139 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||||| ||| || |||||||||||||||| ||| Sbjct 1733138 GATGACTTGATGTCCTCATCACCTTCCTCCGGTTTATCA 1733100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415940138380