Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19]
14,854 sequences; 705,934,411 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq14854 127 2e-27
seq62 127 2e-27
seq19 127 2e-27
seq178 123 2e-26
seq55 122 7e-26
seq66 113 4e-23
seq479 107 2e-21
seq127 102 7e-20
seq842 100 2e-19
seq298 100 2e-19
seq181 100 2e-19
seq273 96.9 3e-18
seq859 91.5 1e-16
seq172 89.7 4e-16
seq278 82.4 6e-14
seq92 75.2 9e-12
>seq14854
Length=155296
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 103076 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 103017
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 103016 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 102957
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 102956 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 102917
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 137958 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 138017
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 138018 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138077
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 138078 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138117
>seq62
Length=2166112
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 715913 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 715854
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 715853 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 715794
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 715793 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 715754
Score = 87.8 bits (96), Expect = 1e-15
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| |||| ||||||| || ||| || | ||| |||| ||| |||||||| | |
Sbjct 788476 TTTTTGGGGTTAGCTCACCTTCGAAGGATTGCGACCCTTTGTCCCGGCCATTGTAGCATG 788417
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| |||| |||||||| ||| | ||||||||||||||| ||||||||||||| |
Sbjct 788416 TGTGTCGCCCAGGGCATAAGGGGCATTATGACTTGACGTCATCCTCACCTTCCTCCGGCT 788357
Query 156 T 156
|
Sbjct 788356 T 788356
>seq19
Length=3257788
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 1890602 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 1890661
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1890662 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1890721
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 1890722 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1890761
>seq178
Length=1263331
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 451195 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 451253
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 451254 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 451313
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 451314 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 451353
>seq55
Length=2254777
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | || |||| ||||||| |||||||||
Sbjct 1873245 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTATTGGGGTTAGCTCACCCTCGCGG 1873304
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 1873305 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1873364
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 1873365 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1873404
>seq66
Length=2155310
Score = 113 bits (124), Expect = 4e-23
Identities = 115/149 (77%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||||||| |||||||| ||| | | |||||||| ||| ||||| ||| | |
Sbjct 7469 GAGTTGCAGAGAACAATCCGAACTGAGGAAATCTTTCTGG-ATTCGCTCCGCCTTACAGC 7411
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| || ||| |||| | |||||||| ||||||| | || |||||||||||||||
Sbjct 7410 CTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGACCAGCCCATAAGGGCCATG 7351
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCC 151
||||||||||||||||| ||||||||||
Sbjct 7350 CGGACTTGACGTCATCCCTACCTTCCTCC 7322
>seq479
Length=406208
Score = 107 bits (118), Expect = 2e-21
Identities = 122/161 (76%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 232598 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 232540
Query 62 GTTGGCGGCCCTCTGTATGTACCATT-GTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || ||| |||| | ||||| ||| ||||||| |||| |||||||||| ||
Sbjct 232539 CCTTGCTTCCCATTGTAATTGCCATTTGTAGCACGTGTGTGGCCCAGCCCATAAGGGTCA 232480
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||| |||||||||||||||||| || | ||||
Sbjct 232479 TGCGGACTTGACATCATCCCCACCTTCCTCCAGTATATCAC 232439
>seq127
Length=1543856
Score = 102 bits (112), Expect = 7e-20
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 1040320 CCATTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCATGCGGACTTGACGTCATCCCCA 1040261
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||| || | ||||
Sbjct 1040260 CCTTCCTCCAGTATATCAC 1040242
>seq842
Length=77229
Score = 100 bits (110), Expect = 2e-19
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
||||||||| ||||||| || ||| | ||| |||| ||||||| ||||| || |
Sbjct 61153 GAGTTGCAGCCTACAATTCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCACGAG 61094
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| ||| |||| ||| |||||||| | ||||| |||| |||||||| ||||
Sbjct 61093 ATCGCGACCCTTTGTCCTAGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCATG 61034
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160
| ||||||||||||||| | | ||||||||| || |||
Sbjct 61033 ATGACTTGACGTCATCCTCGCTTTCCTCCGGCTTATCA 60996
>seq298
Length=802456
Score = 100 bits (110), Expect = 2e-19
Identities = 119/160 (74%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || |||||| ||| | || ||| |||| |||||| ||||||||
Sbjct 13622 CGAGTTGCAGCCTGCAATCCAAACTTAGG-ACGGTTTTTGGGGTTAGCTTAGCCTCGCGG 13564
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | | |||| ||| |||||||| | ||||| |||| |||||||| |||
Sbjct 13563 GATCACAACCCTTTGTCCCGGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCAT 13504
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| | ||||||||||| || ||||
Sbjct 13503 GATGACTTGACGTCATCCTCCCCTTCCTCCGGCTTATCAC 13464
Score = 95.1 bits (104), Expect = 1e-17
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || |||||| ||| | ||| |||| |||||| ||||||||
Sbjct 4687 CGAGTTGCAGCCTGCAATCCAAACTTAGGACGGGTTTTTGGGGTTAGCTTAGCCTCGCGG 4628
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | | |||| ||| |||||||| | ||||| |||| |||||||| |||
Sbjct 4627 GATCACAACCCTTTGTCCCGGCCATTGTAGCATGTGTGTCGCCCAGGGCATAAGGGGCAT 4568
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| | ||||||||||| || ||||
Sbjct 4567 GATGACTTGACGTCATCCTCCCCTTCCTCCGGCTTATCAC 4528
>seq181
Length=1232176
Score = 100 bits (110), Expect = 2e-19
Identities = 119/160 (74%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 148464 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 148406
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || || |||| | |||||||| || | || |||| ||||||||||||||
Sbjct 148405 CCTTGCTTTCCATTGTAATTGCCATTGTAGCACATATGTGGCCCAGCCCATAAGGGCCAT 148346
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| || |||||||||||||||||||||||| || | ||||
Sbjct 148345 GCGGGCTTGACGTCATCCCCACCTTCCTCAAGTATATCAC 148306
>seq273
Length=876315
Score = 96.9 bits (106), Expect = 3e-18
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| |||| ||||||| |||||||||| | ||| |||| ||| |||||||| | |
Sbjct 155128 TTTTTGGGGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCATG 155069
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|| | |||| |||||||| ||||| ||||||||||||||| |||||| |||||| |
Sbjct 155068 TGAGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTTCTCCGGCT 155009
Query 156 TGTCAC 161
||||
Sbjct 155008 AATCAC 155003
>seq859
Length=69528
Score = 91.5 bits (100), Expect = 1e-16
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| ||||| | ||| | | | || ||| ||| ||||| || | |
Sbjct 14566 CGAGTTGCAGGGAACAATTCAAACTGAGGCAATCGTTTTGG-ATTCGCTCCGCCGTACAG 14624
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | || ||||| ||||||| |||| |||||||||||||||
Sbjct 14625 CCTTGCTTCCCATTGTAATTGCCGTTGTAGCACGTGTGTGGCCCAACCCATAAGGGCCAT 14684
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCC 151
| ||||||||||||||||||| ||||||||
Sbjct 14685 GCGGACTTGACGTCATCCCCATCTTCCTCC 14714
>seq172
Length=1280083
Score = 89.7 bits (98), Expect = 4e-16
Identities = 110/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
||||||| ||| | |||||| ||| | | |||| ||| ||| ||||| || |
Sbjct 1180760 TCGAGTTACAGGGAAAAATCCGAACTGAGGCAATCTTTTTGG-ATTCGCTCCGTCTTACA 1180702
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | | ||| |||| | |||||||| ||||||| |||| ||||||||||||
Sbjct 1180701 GCCTTGTTTCCCATTGTAAATGCCATTGTAGCACGTGTGTGGCCCAGACCATAAGGGCCA 1180642
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCT 149
|| ||||||||||||||||||||||||||
Sbjct 1180641 TGCGGACTTGACGTCATCCCCACCTTCCT 1180613
>seq278
Length=864930
Score = 82.4 bits (90), Expect = 6e-14
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||| ||||||||||||||| |||||||||||||||||||||||||||| || | ||||
Sbjct 643055 GCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 642996
>seq92
Length=1807409
Score = 75.2 bits (82), Expect = 9e-12
Identities = 114/159 (72%), Gaps = 4/159 (3%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||| ||| || |||||| | | | || | | ||| || ||||| ||||||| |
Sbjct 1733255 GAGTTACAGCCTGCAATCCAAATTGAGGACAAATTTTTAGG--TTAGCCGACCCTCGCTG 1733198
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
|| || |||| ||| | ||||||| ||||||| ||||| ||| || | |||
Sbjct 1733197 AATG-CGACCCTTTGTTCCGATCATTGTAGAACGTGTGTAGCCCAGGACATTAGAGGCAT 1733139
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160
|| ||||||| ||| || |||||||||||||||| |||
Sbjct 1733138 GATGACTTGATGTCCTCATCACCTTCCTCCGGTTTATCA 1733100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415940138380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |