Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 203 3e-47 >seq4 Length=4469570 Score = 203 bits (224), Expect = 3e-47 Identities = 584/884 (66%), Gaps = 16/884 (2%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| || ||||| | |||||| |||||||| || || Sbjct 3868490 TCGATTCTGTAT-GTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCA 3868548 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 || || ||||||||||| || || |||||| | || || | | ||||||| Sbjct 3868549 TGGCATCTTTCTGGACGGTAGAAGAAGTCGATCTATCTTCTGATAATCGTCACTGGGAAA 3868608 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | ||||||| ||||||||| | |||||| | || ||||||||||| || | Sbjct 3868609 ACCTAACATCCGGTGAAAGACATTTCATCACTCATGTGCTTGCCTTCTTTGCCGCCTCAG 3868668 Query 61232 ACGGTATCGTCAATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 |||| ||||| ||||| | ||||| ||| | | | || || || || | ||| Sbjct 3868669 ACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTT-CATGAAAGATGTCCAGGTTGCTGAG 3868727 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 |||||| |||||| || ||||| || ||||| |||||| |||| || |||||||||||| Sbjct 3868728 GCGCGTGCTTTCTATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGT 3868787 Query 61351 GTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | || | || ||||||| | ||| | | || || | | | ||||||| ||| || Sbjct 3868788 TTGCTGTTGGAGTCGTACATAAAGGATTCTGACGAAAAGAGCA-AATTGTTCCGTGCAAT 3868846 Query 61410 CGAGACGATACC-GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTA 61468 |||||| || || | | |||| ||| ||| | |||||| | ||||||| || Sbjct 3868847 CGAGACCATCCCTTGTGTTGAA-AAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGT- 3868904 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 | | || || | || || ||| |||| ||||| || || || | || |||| Sbjct 3868905 --TCCGAAACCTTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCA 3868962 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 | ||| || | || ||||||||||| ||||| || | ||||| || | |||| Sbjct 3868963 GCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCT 3869022 Query 61589 TCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTAT 61648 || |||||||| || ||| | ||||| || |||| ||||||||||| |||||| | Sbjct 3869023 TCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTTT 3869082 Query 61649 TCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGG 61708 || | | || || | | |||||||| || | | ||| || || | Sbjct 3869083 ACA---GTTTGCTAAGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTATTGCAGATG 3869139 Query 61709 CGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGA 61768 | || || ||| ||| || || ||| ||| | || | || | || |||| Sbjct 3869140 CTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGGATGA 3869199 Query 61769 ATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGG 61828 || | | | ||| | || || |||||||| || || | |||||| | ||||| Sbjct 3869200 ATGGAGATTTGATGAGTAAATACATAGAATTTGTCGCTGATAGATTGTTGGATGCTTTGG 3869259 Query 61829 G-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTG 61887 | |||| | ||| || ||| | | || |||||||||| ||||| ||||| || Sbjct 3869260 GTTATG-ACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGCCTA 3869318 Query 61888 GATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 3869319 CAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 3869362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397496027022560