Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq22854 230 6e-58
seq31236 224 3e-56
seq2378 192 2e-46
seq1488 172 1e-40
seq255 123 6e-26
seq780 100 7e-19
seq4206 82.4 2e-13
seq2125 82.4 2e-13
seq37 75.2 3e-11
>seq22854
Length=1460
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 783 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 842
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 843 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 902
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 903 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 962
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 963 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 1022
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 1023 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 1082
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 1083 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 1142
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 1143 CCCGTGCAGTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 1191
>seq31236
Length=1467
Score = 224 bits (248), Expect = 3e-56
Identities = 291/401 (73%), Gaps = 2/401 (0%)
Strand=Plus/Minus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| ||||||||| ||||||||||||||||||| || ||| |||||||||||
Sbjct 1134 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 1075
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||||| | |||||||||||||| | ||| || | | |||| | | || |||||||
Sbjct 1074 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 1015
Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190
||||| |||| ||| || | | ||| | || |||| | || || | |
Sbjct 1014 AGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGG 955
Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250
||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| |||
Sbjct 954 GAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCA 895
Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310
| ||||| |||||||| || | |||||||| ||||||| || |||||||||
Sbjct 894 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGAT 835
Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG-- 368
|||| ||||||| ||| |||||||| ||||| | || | | | || ||
Sbjct 834 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCA 775
Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| ||||||||||||| |||| ||||||||||| |||
Sbjct 774 GTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 734
>seq2378
Length=68098
Score = 192 bits (212), Expect = 2e-46
Identities = 245/334 (73%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 9186 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 9245
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124
|| ||||||| ||||||||||||| | || ||||||| | | || || |||
Sbjct 9246 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 9302
Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183
|| | | | || |||| | | ||| | | || ||| | ||| | |||||
Sbjct 9303 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGGGTGAGACAGAG 9359
Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243
| | |||||||| | |||||| ||||||| || | || | | |||||| |||| ||
Sbjct 9360 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAAATCTACGAAGGAACGCCAAAAGC 9419
Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303
||||||||| | ||||| || |||||| | ||||||| |||||||| ||||||
Sbjct 9420 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 9479
Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||||||||| ||| ||||||||
Sbjct 9480 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 9513
>seq1488
Length=468551
Score = 172 bits (190), Expect = 1e-40
Identities = 235/327 (72%), Gaps = 1/327 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||| | ||||||||| |||||||||||||||| || || ||| |||||||||||
Sbjct 242130 GAATAAGTATCGGCTAACTCTGTGCCAGCAGCCGCGGGAAGACAGAGGATGCAAGCGTTA 242189
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||||| | |||||||||||||| | ||| || | | |||| | | || |||||||
Sbjct 242190 TCCGGAATGATTGGGCGTAAAGCGTATGTAGGTGGCTTTTTAAGTCCGTCGTCAAATCCC 242249
Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190
|||| |||| || | | || | | | | || |||| | || || | |
Sbjct 242250 AAGGCTCAACCCTGG-ACAACGTTGGAAAATACCAAGCTGGAGTACGGTAGGGGCAGAGG 242308
Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250
||||| || ||| ||||||||||||| || | ||||||||| |||||| |||
Sbjct 242309 GAATTTTCGGTAGAGCGCTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCGAAAGCA 242368
Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310
| ||||| |||||||| || | |||||| | ||||||| || |||||||||
Sbjct 242369 CTCTGCTGGGCCGACACTGACACTAAGAGACGAAATCTAGGGGAGCGAATGGGATTAGAT 242428
Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337
||||| ||||||| ||| ||||||||
Sbjct 242429 ACCCTAGTAGTCCTAGCCGTAAACGAT 242455
>seq255
Length=403878
Score = 123 bits (136), Expect = 6e-26
Identities = 106/131 (81%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| ||||||||| ||||||||||||||||||| || ||| |||||||||||
Sbjct 389012 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 388953
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||||| | |||||||||||||| | ||| || | | |||| | | || |||||||
Sbjct 388952 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 388893
Query 131 CGGGCTTAACC 141
||||| ||||
Sbjct 388892 AGGGCTCAACC 388882
>seq780
Length=650642
Score = 100 bits (110), Expect = 7e-19
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| ||||||||| ||||||||||||||||||| || ||| |||||||||||
Sbjct 273590 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 273531
Query 71 ATCGGAATTACTGGGCGTAAAGCGT 95
|||||| | ||| ||||||||||
Sbjct 273530 TCCGGAATGATTGGACGTAAAGCGT 273506
>seq4206
Length=13527
Score = 82.4 bits (90), Expect = 2e-13
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG----CAAGCGTTAA 71
||||| |||||||| ||||||||||| |||||||| ||| ||| | |||| |||
Sbjct 4540 AGCAC-GGCTAACTCCGTGCCAGCAGTCGCGGTAAGACGGGGGGGGGGGGCAAGTGTTCT 4482
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106
||||||| ||||||||||||| | || |||||||
Sbjct 4481 TCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 4447
>seq2125
Length=90154
Score = 82.4 bits (90), Expect = 2e-13
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239
||||| ||| |||| | ||||| ||||||| |||| |||| | ||||| ||||
Sbjct 85695 AGAGGATTGTGTAATTTCGTGTGTAAGGGTGAAATCCGTAAATATACGAAGGAATGCCAA 85636
Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299
|| |||| | | | |||| | |||||| | |||| | |||||||| ||
Sbjct 85635 AAGCAAAGGTAACTCTTTGGGTCCCTATCGACGCTTGGGTGAGAAAACATGGGGAGCGAA 85576
Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||||| |||||||||| ||| || |||||
Sbjct 85575 CAGGATTAGATACCTTGGTAGTCCATGCCGTATACGAT 85538
>seq37
Length=1785839
Score = 75.2 bits (82), Expect = 3e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 266 ACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 324
||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 820599 ACTGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCA 820541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1288590733248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |