Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq22854 230 6e-58 seq31236 224 3e-56 seq2378 192 2e-46 seq1488 172 1e-40 seq255 123 6e-26 seq780 100 7e-19 seq4206 82.4 2e-13 seq2125 82.4 2e-13 seq37 75.2 3e-11 >seq22854 Length=1460 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 783 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 842 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 843 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 902 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 903 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 962 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 963 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 1022 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 1023 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 1082 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 1083 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 1142 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 1143 CCCGTGCAGTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 1191 >seq31236 Length=1467 Score = 224 bits (248), Expect = 3e-56 Identities = 291/401 (73%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 1134 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 1075 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 1074 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 1015 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||| |||| ||| || | | ||| | || |||| | || || | | Sbjct 1014 AGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGG 955 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| ||| Sbjct 954 GAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCA 895 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||||| ||||||| || ||||||||| Sbjct 894 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGAT 835 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG-- 368 |||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 834 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCA 775 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 774 GTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 734 >seq2378 Length=68098 Score = 192 bits (212), Expect = 2e-46 Identities = 245/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 9186 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 9245 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 9246 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 9302 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| | ||| | ||||| Sbjct 9303 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGGGTGAGACAGAG 9359 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || | || | | |||||| |||| || Sbjct 9360 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAAATCTACGAAGGAACGCCAAAAGC 9419 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 9420 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 9479 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 9480 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 9513 >seq1488 Length=468551 Score = 172 bits (190), Expect = 1e-40 Identities = 235/327 (72%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||| | ||||||||| |||||||||||||||| || || ||| ||||||||||| Sbjct 242130 GAATAAGTATCGGCTAACTCTGTGCCAGCAGCCGCGGGAAGACAGAGGATGCAAGCGTTA 242189 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 242190 TCCGGAATGATTGGGCGTAAAGCGTATGTAGGTGGCTTTTTAAGTCCGTCGTCAAATCCC 242249 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 |||| |||| || | | || | | | | || |||| | || || | | Sbjct 242250 AAGGCTCAACCCTGG-ACAACGTTGGAAAATACCAAGCTGGAGTACGGTAGGGGCAGAGG 242308 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| || ||| ||||||||||||| || | ||||||||| |||||| ||| Sbjct 242309 GAATTTTCGGTAGAGCGCTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCGAAAGCA 242368 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||| | ||||||| || ||||||||| Sbjct 242369 CTCTGCTGGGCCGACACTGACACTAAGAGACGAAATCTAGGGGAGCGAATGGGATTAGAT 242428 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| |||||||| Sbjct 242429 ACCCTAGTAGTCCTAGCCGTAAACGAT 242455 >seq255 Length=403878 Score = 123 bits (136), Expect = 6e-26 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 389012 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 388953 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 388952 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 388893 Query 131 CGGGCTTAACC 141 ||||| |||| Sbjct 388892 AGGGCTCAACC 388882 >seq780 Length=650642 Score = 100 bits (110), Expect = 7e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 273590 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 273531 Query 71 ATCGGAATTACTGGGCGTAAAGCGT 95 |||||| | ||| |||||||||| Sbjct 273530 TCCGGAATGATTGGACGTAAAGCGT 273506 >seq4206 Length=13527 Score = 82.4 bits (90), Expect = 2e-13 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 16 AGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG----CAAGCGTTAA 71 ||||| |||||||| ||||||||||| |||||||| ||| ||| | |||| ||| Sbjct 4540 AGCAC-GGCTAACTCCGTGCCAGCAGTCGCGGTAAGACGGGGGGGGGGGGCAAGTGTTCT 4482 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 ||||||| ||||||||||||| | || ||||||| Sbjct 4481 TCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 4447 >seq2125 Length=90154 Score = 82.4 bits (90), Expect = 2e-13 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 ||||| ||| |||| | ||||| ||||||| |||| |||| | ||||| |||| Sbjct 85695 AGAGGATTGTGTAATTTCGTGTGTAAGGGTGAAATCCGTAAATATACGAAGGAATGCCAA 85636 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 || |||| | | | |||| | |||||| | |||| | |||||||| || Sbjct 85635 AAGCAAAGGTAACTCTTTGGGTCCCTATCGACGCTTGGGTGAGAAAACATGGGGAGCGAA 85576 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| |||||||||| ||| || ||||| Sbjct 85575 CAGGATTAGATACCTTGGTAGTCCATGCCGTATACGAT 85538 >seq37 Length=1785839 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 266 ACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 324 ||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 820599 ACTGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCA 820541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288590733248