Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq7442 136 5e-30
seq224 132 7e-29
seq1592 127 3e-27
seq2751 109 8e-22
seq778 109 8e-22
seq1637 73.4 5e-11
>seq7442
Length=2782
Score = 136 bits (150), Expect = 5e-30
Identities = 179/248 (72%), Gaps = 20/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||
Sbjct 749 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 807
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| || || |||| ||| ||
Sbjct 808 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 859
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||||||||||||||||||||||||||| ||||||||||
Sbjct 860 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 908
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | || | ||| ||||||||||||| | ||||||||||||
Sbjct 909 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 968
Query 241 TTACGGTA 248
|| ||||
Sbjct 969 TTCGGGTA 976
>seq224
Length=468181
Score = 132 bits (146), Expect = 7e-29
Identities = 175/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 6231 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 6289
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || || ||||| ||
Sbjct 6290 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 6336
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 6337 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 6390
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| | |||||||||||||| |
Sbjct 6391 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 6450
Query 246 GTA 248
|||
Sbjct 6451 GTA 6453
>seq1592
Length=309605
Score = 127 bits (140), Expect = 3e-27
Identities = 174/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || | |||| | ||||| | ||| || ||||
Sbjct 271148 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCACACATGGTCTTAC-GACTTTGCGGAGACC 271206
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || || ||||| ||
Sbjct 271207 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 271253
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 271254 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 271307
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| | |||||||||||||| |
Sbjct 271308 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 271367
Query 246 GTA 248
|||
Sbjct 271368 GTA 271370
>seq2751
Length=47027
Score = 109 bits (120), Expect = 8e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 33092 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 33151
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| | |||||||||||||| ||||
Sbjct 33152 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGGGTA 33199
Score = 89.7 bits (98), Expect = 7e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 32912 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 32971
Query 201 CGAACGCCTTAGTATTCTCTACCT 224
|| | ||| |||||||||||||
Sbjct 32972 CGCGCCCCTAGGTATTCTCTACCT 32995
Score = 75.2 bits (82), Expect = 2e-11
Identities = 66/81 (81%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 32707 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 32765
Query 66 TGTGTTTTTAGTAAACAGTCG 86
||||||||| |||||||||||
Sbjct 32766 TGTGTTTTTGGTAAACAGTCG 32786
>seq778
Length=731603
Score = 109 bits (120), Expect = 8e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 376603 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGATAGAGTTGTCT 376662
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| | |||||||||||||| ||||
Sbjct 376663 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGGGTA 376710
>seq1637
Length=276307
Score = 73.4 bits (80), Expect = 5e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCA 191
|||||||||||||||||||||||||| ||||||||||| |||| || |||
Sbjct 228241 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCGTAGCCA 228192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693873531526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |