Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq7442 136 5e-30 seq224 132 7e-29 seq1592 127 3e-27 seq2751 109 8e-22 seq778 109 8e-22 seq1637 73.4 5e-11 >seq7442 Length=2782 Score = 136 bits (150), Expect = 5e-30 Identities = 179/248 (72%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 749 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 807 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 808 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 859 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 860 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 908 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| | |||||||||||| Sbjct 909 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 968 Query 241 TTACGGTA 248 || |||| Sbjct 969 TTCGGGTA 976 >seq224 Length=468181 Score = 132 bits (146), Expect = 7e-29 Identities = 175/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 6231 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 6289 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 6290 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 6336 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 6337 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 6390 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 6391 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 6450 Query 246 GTA 248 ||| Sbjct 6451 GTA 6453 >seq1592 Length=309605 Score = 127 bits (140), Expect = 3e-27 Identities = 174/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || | |||| | ||||| | ||| || |||| Sbjct 271148 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCACACATGGTCTTAC-GACTTTGCGGAGACC 271206 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 271207 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCT------------- 271253 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 271254 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 271307 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 271308 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 271367 Query 246 GTA 248 ||| Sbjct 271368 GTA 271370 >seq2751 Length=47027 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 33092 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 33151 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| | |||||||||||||| |||| Sbjct 33152 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGGGTA 33199 Score = 89.7 bits (98), Expect = 7e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 32912 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 32971 Query 201 CGAACGCCTTAGTATTCTCTACCT 224 || | ||| ||||||||||||| Sbjct 32972 CGCGCCCCTAGGTATTCTCTACCT 32995 Score = 75.2 bits (82), Expect = 2e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 32707 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 32765 Query 66 TGTGTTTTTAGTAAACAGTCG 86 ||||||||| ||||||||||| Sbjct 32766 TGTGTTTTTGGTAAACAGTCG 32786 >seq778 Length=731603 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 376603 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGATAGAGTTGTCT 376662 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| | |||||||||||||| |||| Sbjct 376663 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGGGTA 376710 >seq1637 Length=276307 Score = 73.4 bits (80), Expect = 5e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCA 191 |||||||||||||||||||||||||| ||||||||||| |||| || ||| Sbjct 228241 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCGTAGCCA 228192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693873531526