Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq31236 475 1e-131 seq915 470 4e-130 seq22854 264 3e-68 seq2378 210 7e-52 seq22649 201 3e-49 seq973 123 7e-26 seq434 102 2e-19 seq967 87.8 5e-15 seq1 86.0 2e-14 seq39665 77.0 1e-11 >seq31236 Length=1467 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 736 TACGTTCGCACGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 677 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 676 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 617 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 616 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 559 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 558 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 499 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 498 CAACGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 439 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 438 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 379 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || |||| ||| || |||||||||||||| Sbjct 378 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 319 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 318 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 259 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 258 CGGTGAATTCGTTCCCG 242 >seq915 Length=368017 Score = 470 bits (520), Expect = 4e-130 Identities = 395/481 (82%), Gaps = 3/481 (1%) Strand=Plus/Plus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 287814 AAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATG 287873 Query 77 CAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTC 136 ||| |||||||||||||||| |||||||| | || ||||| || | ||||| | Sbjct 287874 CAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTG 287933 Query 137 CCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATG 196 || |||||| || | ||||||| ||||||| ||||||||||||||| ||| || || Sbjct 287934 CC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTG 287991 Query 197 TTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGC 256 ||||||||||||||||||||||||||||||| | |||||||||| | || |||| || Sbjct 287992 TTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACGTTGAGTTTGGA 288051 Query 257 ACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCAT 316 || || | |||||||||||| || ||||||||||||| ||| |||||||| ||||||| Sbjct 288052 ACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCAT 288111 Query 317 GCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACC 376 |||||||||| ||||| |||||||||||||||||| | |||||||| |||| || Sbjct 288112 GCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCC 288171 Query 377 GCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGAC 436 |||||| ||| || |||| ||| || |||||||||||||| || |||||||||| | Sbjct 288172 GCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCC 288231 Query 437 TATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCC 495 | ||||||| ||||||||||||||||| | |||| ||| | |||||||| ||||||| Sbjct 288232 TGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCC 288291 Query 496 G 496 | Sbjct 288292 G 288292 >seq22854 Length=1460 Score = 264 bits (292), Expect = 3e-68 Identities = 226/275 (82%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1189 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1248 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 1249 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1308 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | ||||| ||| || | ||||||| ||||||| ||||||||| Sbjct 1309 TTGAAAGAGAGGGGT-GCCTTC-GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1366 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1367 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1426 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 || | || |||| || || || | ||||||||| Sbjct 1427 CA-CGTTGAGTTTGGAACCCTGAACAGACTGCCGG 1460 >seq2378 Length=68098 Score = 210 bits (232), Expect = 7e-52 Identities = 189/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 10186 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 10245 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| ||||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 10246 GGCTGGGCCACACACGTGCTACAATGGAAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 10305 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 |||||| || |||| | ||||||||||||||| |||||||||||| | |||||| Sbjct 10306 GCAAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGT 10364 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 10365 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 10420 Score = 167 bits (184), Expect = 7e-39 Identities = 180/234 (77%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 9581 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 9640 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 9641 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 9693 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGA-GT---GACAGGTGATGCATGGTTG 173 ||| | | | ||| ||| || || || || ||||||| ||||||| || Sbjct 9694 AAGA---AAACCTGTCCTTAACGGGATGGTACTGACGTTCATACAGGTGCTGCATGGCTG 9750 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| || ||| Sbjct 9751 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAAACCT 9804 >seq22649 Length=1522 Score = 201 bits (222), Expect = 3e-49 Identities = 187/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 510 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 569 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 570 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 629 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| |||||||||||| | |||||| Sbjct 630 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGT 688 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 689 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 744 Score = 95.1 bits (104), Expect = 4e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 57 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 116 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 117 GAGCGAAACCCT 128 >seq973 Length=298863 Score = 123 bits (136), Expect = 7e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 122768 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 122827 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCT 261 |||||||||||| | |||||||||| | || |||| || || || Sbjct 122828 GAGCGCAACCCTCGTGTTTAGTTGCCAACGTTGAGTTTGGAACCCT 122873 >seq434 Length=224846 Score = 102 bits (112), Expect = 2e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 || || | ||||||||||||||||||||||| | ||| ||| ||||||||||||||||| Sbjct 219875 GCCAGTTCGAAACTCAAAGGAATTGACGGGGGCTTGCAAAAGTGGTGGAGCATGTGGTTT 219934 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCA 96 ||||| | ||||||| | |||||||||| Sbjct 219935 AATTCAATACAACGCGCAAAACCTTACCA 219963 >seq967 Length=318262 Score = 87.8 bits (96), Expect = 5e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 31 TGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACC 90 || ||||| || |||||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 41307 TGGCGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACC 41366 Query 91 TTACCA 96 |||||| Sbjct 41367 TTACCA 41372 >seq1 Length=3292865 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 || ||| ||||||| ||| | | |||||| ||| || |||||||||||||||||||| | Sbjct 2988017 CAAGTGGTGCATGGCTGTTG--ATCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAATG 2987960 Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTA 262 ||||||||||| | | |||||||| | || | || || || ||| Sbjct 2987959 AGCGCAACCCTCGTGTTGAGTTGCCAACGTTGACTTTGGAACCCTA 2987914 >seq39665 Length=999 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | |||||| ||||||| || || Sbjct 916 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACAAGGAGTGGAGCCTGCGG 858 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| || ||||| Sbjct 857 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502822939520