Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq7442 183 6e-44 seq1592 178 3e-42 seq1511 178 3e-42 seq224 174 3e-41 seq44 172 1e-40 seq2751 161 2e-37 seq14 125 1e-26 seq88 116 7e-24 >seq7442 Length=2782 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 375 GGGACAGTTTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 316 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 315 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 257 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 256 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 197 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 196 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 147 >seq1592 Length=309605 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 270769 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 270710 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 270709 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 270651 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 270650 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 270591 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 270590 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 270541 >seq1511 Length=404814 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 240463 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 240404 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 240403 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 240345 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 240344 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 240285 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 240284 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 240235 >seq224 Length=468181 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 5852 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 5793 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 5792 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 5734 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||||||| |||| |||| ||||||| ||| Sbjct 5733 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAATTCGGCCTTAGTGATCCGACGG 5674 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 5673 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 5624 >seq44 Length=1175378 Score = 172 bits (190), Expect = 1e-40 Identities = 167/212 (79%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| |||||||||| |||||||||||| ||||| | |||| | Sbjct 966721 CAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 966780 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 ||| ||| | || | | |||||||||||| ||||| | |||||||| | |||| Sbjct 966781 GCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCA 966839 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 | ||| |||||||||||||||||| |||| ||||||| |||||| || ||||| ||||| Sbjct 966840 CCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCG 966899 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| || |||||| Sbjct 966900 TCGCTCAACGGATAAAAGTTACTCTAGGGATA 966931 >seq2751 Length=47027 Score = 161 bits (178), Expect = 2e-37 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | ||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 32263 GGGACATTCTCATGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 32204 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||| | ||| ||| | | | |||||||||||| ||||| | Sbjct 32203 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGTCCCTCGAGTGCAAAGGCAGAAGGGAG 32144 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| | || Sbjct 32143 CTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACAGT 32084 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| || | |||||| ||||||||||| ||| || |||||| Sbjct 32083 GCCGAGTGGAAGGGTCTTCGCTCAACGGATAAAAGTTACTCTAGGGATA 32035 >seq14 Length=1475405 Score = 125 bits (138), Expect = 1e-26 Identities = 134/175 (77%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAA----CCA 203 |||||||||| |||||| ||||| ||||| | |||| | ||| ||| | ||| Sbjct 1047963 GCCTCCCAAAAGGTAACGTAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCA 1048022 Query 204 TGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGAC 263 | || ||||||| |||| ||||| | |||| ||| | |||| | ||| ||||||||| Sbjct 1048023 T-CG---AGTGCAATGGCAGAAGGGAGCTTGAGTGCAAGACCCACCCGTCGAGCAGGGAC 1048078 Query 264 GAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 ||||||||| |||| ||||||| |||||| || ||||| || |||||||| |||| Sbjct 1048079 GAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTCGCTCAACGG 1048133 Score = 75.2 bits (82), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| ||| ||||||| ||||| | ||| | ||| ||||| || Sbjct 89890 GCCTCCCAAAAGATAATGGAGGCGTGCAAAGGTTTCCTTGGACCGGACGGAAATTG-GCC 89832 Query 208 CAC-AGTGCAAAGGCAAAAGGGT-GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGA 265 | | |||||||||||| ||||| | |||||||| | |||| | ||| ||||||||||| Sbjct 89831 CTCTAGTGCAAAGGCATAAGGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGA 89772 Query 266 AAGTCGGGCT 275 ||||||| || Sbjct 89771 AAGTCGGCCT 89762 >seq88 Length=904765 Score = 116 bits (128), Expect = 7e-24 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||||||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 856466 AGTGCAAAGGCAAAAGGGAGCTTGACTGCAAAACCCACCCGTCGAGCAGGGACGAAAGTC 856525 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 |||| |||||| |||||| || | ||| || |||| ||| ||||||||||| ||| Sbjct 856526 AACCTTAGAGATCCGACGGTGCCGAGTAGAAGGGTCGTCACTCAACGGATAAAAGTTAC 856584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981631154112