Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq7442 161 4e-37 seq1592 159 1e-36 seq2751 158 4e-36 seq1545 143 1e-31 seq763 122 3e-25 seq43 116 1e-23 seq33 111 6e-22 seq973 100 1e-18 seq113 89.7 2e-15 seq3519 86.0 2e-14 seq80 78.8 3e-12 >seq7442 Length=2782 Score = 161 bits (178), Expect = 4e-37 Identities = 213/289 (74%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1764 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1823 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1824 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1883 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1884 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1943 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 1944 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1996 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 || || ||| | | | |||| |||||||||||||| |||||||| Sbjct 1997 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 2043 Score = 143 bits (158), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| |||||||||||||| |||||||| |||| ||| || || | | ||| Sbjct 2151 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--GGT--CT----GG---TCCCCCTC 2199 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 | || | ||| || | ||||||| || ||||||||||||||| ||||| |||||| Sbjct 2200 CCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTC 2259 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570 ||| ||||||||||||||| | |||||||||||||| |||||||||||| ||| || Sbjct 2260 ACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGG 2319 Query 571 TGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| | |||||||||| ||| || Sbjct 2320 TGGTCCTTGCTGATTCACACGGGATTCCA 2348 >seq1592 Length=309605 Score = 159 bits (176), Expect = 1e-36 Identities = 169/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 272160 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 272219 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 272220 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 272279 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 272280 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 272339 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| |||||||||||||||||||| Sbjct 272340 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT 272375 >seq2751 Length=47027 Score = 158 bits (174), Expect = 4e-36 Identities = 168/219 (77%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||| Sbjct 34055 CTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACC 34114 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 34115 CCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT 34174 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGC 315 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 34175 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGA 34234 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| |||||||||||||||||||| Sbjct 34235 CAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT 34269 >seq1545 Length=361571 Score = 143 bits (158), Expect = 1e-31 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 66110 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 66051 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 66050 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 65991 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||||| || || ||||||||||||||||| | ||| Sbjct 65990 CACAAGTCATCCCCGAATTTTTCCACATACGTGGGTTCGGTCCTCCAAGGCCCGTTAGAG 65931 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | ||| ||||||| ||||| ||||||| | | |||||||| Sbjct 65930 CTCTCTTTAACCTGCTCATGGCTAGATCAATCGGTTTCGGGTC 65888 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 65726 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 65667 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 65666 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 65607 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 65606 GAGGGTGGTCCC 65595 >seq763 Length=772378 Score = 122 bits (134), Expect = 3e-25 Identities = 213/301 (71%), Gaps = 27/301 (9%) Strand=Plus/Minus Query 233 AGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||| ||||||| ||||||| || | |||| |||||| |||| |||||||||||||| Sbjct 276793 AGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCAC 276734 Query 293 TTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 | ||||||| | | | | ||| || | ||||||| |||||||||||||||| Sbjct 276733 CCAGGTTCGGGTCCATAAGCAGTGACAAT----TGCCCTATGAAGACTCGCTTTCGCTAC 276678 Query 351 GGCTACCCCACACGG----GTTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCT 405 |||| || || |||||| || ||| | | | |||| |||||||||| Sbjct 276677 GGCT---CCGGTGGGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCT 276623 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 |||| |||||||| |||| ||| || || | | |||| || | ||| || Sbjct 276622 TCAACAGGCACGCGGTCA--GGGT--CT----GG---TCCCCCTCCCACTGCTTGAGAGC 276574 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||| || ||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct 276573 TTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGG 276514 Query 526 T 526 | Sbjct 276513 T 276513 >seq43 Length=1379160 Score = 116 bits (128), Expect = 1e-23 Identities = 128/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||| |||||||||||||||| | | | ||| || || | |||||| Sbjct 225050 GCTGCGCCTCAACGCATT-CGGGGAGAACCAGCTAGCTCTAGGTTCGAGTGTCATTTCAC 224992 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| | | | |||||| | ||| ||||| | ||||||| || Sbjct 224991 CCCTAACCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGT 224932 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||| | |||| | || |||||||||||||| | |||||||| Sbjct 224931 TTCACCCAAGTTTCATCATGGTCATGGATAGATCACCCAGGTTCGGGTC 224883 >seq33 Length=2198749 Score = 111 bits (122), Expect = 6e-22 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 146 AAATGCATTTCGGGGAGAACCAGCTATC-ACGAAGTTTGATTGGCCTTTCACCCCTATCC 204 |||| |||||| ||| |||||||||| ||| || | ||||||||||||||||| || Sbjct 985815 AAATAGATTTCGCGGAAAACCAGCTATATACGTTCTTGG-TTGGCCTTTCACCCCTAGCC 985757 Query 205 ACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCC 263 ||| ||||||||| | ||| | || || ||||||| ||||||||| | | ||| | Sbjct 985756 ACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTTGGTCCTCCAAGGCCTGTTAGAGC 985697 Query 264 GCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | ||||||||||| ||||| |||||| | | |||||||| Sbjct 985696 TCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 985655 >seq973 Length=298863 Score = 100 bits (110), Expect = 1e-18 Identities = 194/277 (70%), Gaps = 27/277 (10%) Strand=Plus/Minus Query 260 ACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCA 317 |||| |||||| |||| |||||||||||||| | |||||||| | | | ||| || Sbjct 119302 ACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACA 119243 Query 318 CTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCT 373 | | ||||| |||||||||||||||||||| || || | ||||| Sbjct 119242 ATTGT----CCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCA 119190 Query 374 CGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 || ||| | | | |||| |||||| ||||||| |||||||| |||| ||| | Sbjct 119189 AGC--CACTGCCTATGAGTCGCCGGCTCACTCTTCAACAGGCACGCGGTCAG--GGT--C 119136 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 | || | | |||| || | ||| || | ||||||| || |||||||||||| Sbjct 119135 T----GG---TCCCCCTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCC 119083 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||| ||||| ||||||||| ||||||||||||||| Sbjct 119082 CCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 119046 >seq113 Length=822347 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541 |||| ||||||| |||| |||| ||||||||||||||||||||||| | |||| | Sbjct 530336 TATTACACTCCCTAAATAGGGTTCTTT-CACCTTTCCCTCACGGTACTTGTACACTATTG 530278 Query 542 GTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| | |||| || ||||||||| |||||||||| Sbjct 530277 GTCATCGAGGAATACTTAGGCTTAGAGGGTGGTCCC 530242 >seq3519 Length=24458 Score = 86.0 bits (94), Expect = 2e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570 |||||||||||||||||||||| |||||||||||| |||| || ||||||||| ||| Sbjct 19837 ACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGG 19778 Query 571 TGGTCCC 577 ||||||| Sbjct 19777 TGGTCCC 19771 >seq80 Length=947797 Score = 78.8 bits (86), Expect = 3e-12 Identities = 117/166 (70%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| |||| ||||| |||||||||| ||| | | || || || | ||||||||||| Sbjct 33349 CCTCAATGTATTTCAGGGAGAACCAACTAGCTCTGGATTCGAGTGACATTTCACCCCTAA 33408 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||| |||||| | | ||||| || | || |||| ||||||| || | ||| Sbjct 33409 ACACTACTCATCCGGTGATTTTTCCACATCAG-----TCGGACCTCCACTTAGTTTCACC 33463 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG 308 | |||||| | || |||||||||||||| | ||||| | ||| Sbjct 33464 CAAGCTTCATCTTGGTCATGGATAGATCACCCAGGTTCGGATTTTG 33509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816177509888