Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq7442 158 3e-36
seq763 140 8e-31
seq973 116 9e-24
seq1545 102 2e-19
seq2751 87.8 4e-15
seq1592 87.8 4e-15
seq113 77.0 8e-12
seq50576 75.2 3e-11
seq41759 73.4 1e-10
seq3519 73.4 1e-10
>seq7442
Length=2782
Score = 158 bits (174), Expect = 3e-36
Identities = 212/290 (73%), Gaps = 14/290 (5%)
Strand=Plus/Plus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194
|||||| |||||||||||| ||||| | |||| | ||| |||| | |||||||
Sbjct 2085 GCCCTATGAAGACTCGCTTT-CGCTATGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTG 2142
Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC---- 250
|| |||||| | | |||| | ||| ||| |||| |||| ||| |
Sbjct 2143 CCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGGGTC-----TGGTCCCCC 2197
Query 251 TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310
|||||||||||| || |||||||||| | ||||||||||||||| | |||||||||
Sbjct 2198 TCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTT 2256
Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370
||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| |
Sbjct 2257 TTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCA 2316
Query 371 GGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| |||||| | ||||| || || | ||||| || | |||||||
Sbjct 2317 AGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2366
Score = 95.1 bits (104), Expect = 3e-17
Identities = 164/224 (73%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 1830 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 1886
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | |||
Sbjct 1887 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 1942
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTT 186
||| | |||||| ||||||||| |||||||||| |||| | ||| |||| |
Sbjct 1943 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTGGGTTCCCTTAA-CCA 1999
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGC 230
||||||| || |||||| | | |||| | ||| ||| ||||
Sbjct 2000 AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 2043
>seq763
Length=772378
Score = 140 bits (154), Expect = 8e-31
Identities = 216/295 (73%), Gaps = 20/295 (7%)
Strand=Plus/Minus
Query 41 AGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGAT 100
||||||||||| |||||| ||||| | |||||| | |||| |||| ||| ||||||||
Sbjct 276793 AGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAGC-TTCATCCTGGTCAT-GGATAGAT 276737
Query 101 CGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGC 160
| ||| | |||||||| | | ||| ||| | |||||| ||||||||| ||||||
Sbjct 276736 CACCCAG-GTTCGGGTCCA-TAAGCAGTGAC-AATTGCCCTATGAAGACTCGC-TTTCGC 276681
Query 161 TACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATA 218
|||| |||| | ||| |||| | ||||||| || |||||| | | |||| |
Sbjct 276680 TACGGCTCCGGTGGGTTCCCTTAA-CCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTT 276622
Query 219 CAAAAGGTACGCAGTCACCCAACAAAGTGG----GCTCCCACTGCTTGTACGCATACGGT 274
||| ||| |||| ||| | ||| ||||||||||||| || ||||||
Sbjct 276621 CAACAGGCACGCGGTC-----AGGGTCTGGTCCCCCTCCCACTGCTTGAGAGCTTACGGT 276567
Query 275 TTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
|||| | ||||||||||||||| | |||||||||||| || ||||||||||||
Sbjct 276566 TTCATGTTCTATTTCACTCCCCGAT-GGGGGTTCTTTTCACCCTTCCCTCACGGT 276513
>seq973
Length=298863
Score = 116 bits (128), Expect = 9e-24
Identities = 196/272 (72%), Gaps = 19/272 (7%)
Strand=Plus/Minus
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 119302 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 119247
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | | |||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 119246 GACAATT-GTCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 119189
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | || | | ||| ||| |||| |||| |
Sbjct 119188 -GCCACTGCCTATGAGTCGCCGGCTCACTCTTCAACAGGCACGCGGTCAGGGTC-----T 119135
Query 247 GGGC----TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302
|| | |||||||||||| || |||||||||| | ||||||||||||||| | |
Sbjct 119134 GGTCCCCCTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GG 119076
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAG 334
||||||||||| || |||||||||||||||||
Sbjct 119075 GGGTTCTTTTCACCCTTCCCTCACGGTACTAG 119044
>seq1545
Length=361571
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 65721 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 65663
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 65662 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 65603
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 65602 GTGGTCCCCC 65593
>seq2751
Length=47027
Score = 87.8 bits (96), Expect = 4e-15
Identities = 123/161 (76%), Gaps = 9/161 (6%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 34120 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 34176
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | |||
Sbjct 34177 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 34232
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169
||| | |||||| ||||||||| |||||||||| ||||
Sbjct 34233 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 34271
>seq1592
Length=309605
Score = 87.8 bits (96), Expect = 4e-15
Identities = 123/161 (76%), Gaps = 9/161 (6%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 272226 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 272282
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | |||
Sbjct 272283 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 272338
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169
||| | |||||| ||||||||| |||||||||| ||||
Sbjct 272339 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 272377
>seq113
Length=822347
Score = 77.0 bits (84), Expect = 8e-12
Identities = 96/128 (75%), Gaps = 4/128 (3%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGG--ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| | ||| | | ||| | || |||| ||||||| | |||||||||
Sbjct 530367 ACTGATTGTTCACATCAGATCTCAAGTTATTTATTACACTCCC-TAAATAGGGTTCTTT- 530310
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || |||||| ||||| || | || |||| ||| ||||
Sbjct 530309 CACCTTTCCCTCACGGTACTTGTACACTATTGGTCATCGAGGAATACTTAGGCTTAGAGG 530250
Query 373 ATGGTCCC 380
|||||||
Sbjct 530249 GTGGTCCC 530242
>seq50576
Length=801
Score = 75.2 bits (82), Expect = 3e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
|| |||||| ||||||||| ||||||| |||| ||||||||| || |||||||||||
Sbjct 33 GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCTAGTATTTAGC 92
Query 365 CTTGGA 370
||||||
Sbjct 93 CTTGGA 98
>seq41759
Length=955
Score = 73.4 bits (80), Expect = 1e-10
Identities = 75/97 (77%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333
||||| | |||||| |||| | | || | | |||||| ||||||||| |||||||
Sbjct 821 TTTCAAGCACTATTTGACTCTCTTTTCAAAG-TCCTTTTCATCTTTCCCTCGCGGTACTT 879
Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370
|||| ||||||||| || ||||||||||||||||
Sbjct 880 GTTCGCTATCGGTCTCTCGCCAGTATTTAGCCTTGGA 916
>seq3519
Length=24458
Score = 73.4 bits (80), Expect = 1e-10
Identities = 57/68 (84%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374
|||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| |
Sbjct 19836 CCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGT 19777
Query 375 GGTCCCCC 382
||||||||
Sbjct 19776 GGTCCCCC 19769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1240628299008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |