Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq7442 158 3e-36 seq763 140 8e-31 seq973 116 9e-24 seq1545 102 2e-19 seq2751 87.8 4e-15 seq1592 87.8 4e-15 seq113 77.0 8e-12 seq50576 75.2 3e-11 seq41759 73.4 1e-10 seq3519 73.4 1e-10 >seq7442 Length=2782 Score = 158 bits (174), Expect = 3e-36 Identities = 212/290 (73%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| |||||||||||| ||||| | |||| | ||| |||| | ||||||| Sbjct 2085 GCCCTATGAAGACTCGCTTT-CGCTATGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTG 2142 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC---- 250 || |||||| | | |||| | ||| ||| |||| |||| ||| | Sbjct 2143 CCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGGGTC-----TGGTCCCCC 2197 Query 251 TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310 |||||||||||| || |||||||||| | ||||||||||||||| | ||||||||| Sbjct 2198 TCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTT 2256 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | Sbjct 2257 TTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCA 2316 Query 371 GGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 2317 AGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2366 Score = 95.1 bits (104), Expect = 3e-17 Identities = 164/224 (73%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1830 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 1886 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 1887 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 1942 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTT 186 ||| | |||||| ||||||||| |||||||||| |||| | ||| |||| | Sbjct 1943 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTGGGTTCCCTTAA-CCA 1999 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGC 230 ||||||| || |||||| | | |||| | ||| ||| |||| Sbjct 2000 AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 2043 >seq763 Length=772378 Score = 140 bits (154), Expect = 8e-31 Identities = 216/295 (73%), Gaps = 20/295 (7%) Strand=Plus/Minus Query 41 AGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGAT 100 ||||||||||| |||||| ||||| | |||||| | |||| |||| ||| |||||||| Sbjct 276793 AGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAGC-TTCATCCTGGTCAT-GGATAGAT 276737 Query 101 CGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGC 160 | ||| | |||||||| | | ||| ||| | |||||| ||||||||| |||||| Sbjct 276736 CACCCAG-GTTCGGGTCCA-TAAGCAGTGAC-AATTGCCCTATGAAGACTCGC-TTTCGC 276681 Query 161 TACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATA 218 |||| |||| | ||| |||| | ||||||| || |||||| | | |||| | Sbjct 276680 TACGGCTCCGGTGGGTTCCCTTAA-CCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTT 276622 Query 219 CAAAAGGTACGCAGTCACCCAACAAAGTGG----GCTCCCACTGCTTGTACGCATACGGT 274 ||| ||| |||| ||| | ||| ||||||||||||| || |||||| Sbjct 276621 CAACAGGCACGCGGTC-----AGGGTCTGGTCCCCCTCCCACTGCTTGAGAGCTTACGGT 276567 Query 275 TTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 |||| | ||||||||||||||| | |||||||||||| || |||||||||||| Sbjct 276566 TTCATGTTCTATTTCACTCCCCGAT-GGGGGTTCTTTTCACCCTTCCCTCACGGT 276513 >seq973 Length=298863 Score = 116 bits (128), Expect = 9e-24 Identities = 196/272 (72%), Gaps = 19/272 (7%) Strand=Plus/Minus Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 119302 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 119247 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | | |||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 119246 GACAATT-GTCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 119189 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | || | | ||| ||| |||| |||| | Sbjct 119188 -GCCACTGCCTATGAGTCGCCGGCTCACTCTTCAACAGGCACGCGGTCAGGGTC-----T 119135 Query 247 GGGC----TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || | |||||||||||| || |||||||||| | ||||||||||||||| | | Sbjct 119134 GGTCCCCCTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GG 119076 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAG 334 ||||||||||| || ||||||||||||||||| Sbjct 119075 GGGTTCTTTTCACCCTTCCCTCACGGTACTAG 119044 >seq1545 Length=361571 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 65721 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 65663 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 65662 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 65603 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 65602 GTGGTCCCCC 65593 >seq2751 Length=47027 Score = 87.8 bits (96), Expect = 4e-15 Identities = 123/161 (76%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 34120 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 34176 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 34177 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 34232 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | |||||| ||||||||| |||||||||| |||| Sbjct 34233 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 34271 >seq1592 Length=309605 Score = 87.8 bits (96), Expect = 4e-15 Identities = 123/161 (76%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 272226 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 272282 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 272283 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 272338 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | |||||| ||||||||| |||||||||| |||| Sbjct 272339 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 272377 >seq113 Length=822347 Score = 77.0 bits (84), Expect = 8e-12 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGG--ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| | ||| | | ||| | || |||| ||||||| | ||||||||| Sbjct 530367 ACTGATTGTTCACATCAGATCTCAAGTTATTTATTACACTCCC-TAAATAGGGTTCTTT- 530310 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || |||||| ||||| || | || |||| ||| |||| Sbjct 530309 CACCTTTCCCTCACGGTACTTGTACACTATTGGTCATCGAGGAATACTTAGGCTTAGAGG 530250 Query 373 ATGGTCCC 380 ||||||| Sbjct 530249 GTGGTCCC 530242 >seq50576 Length=801 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||| ||||||| |||| ||||||||| || ||||||||||| Sbjct 33 GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCTAGTATTTAGC 92 Query 365 CTTGGA 370 |||||| Sbjct 93 CTTGGA 98 >seq41759 Length=955 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||| | |||||| |||| | | || | | |||||| ||||||||| ||||||| Sbjct 821 TTTCAAGCACTATTTGACTCTCTTTTCAAAG-TCCTTTTCATCTTTCCCTCGCGGTACTT 879 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||| ||||||||| || |||||||||||||||| Sbjct 880 GTTCGCTATCGGTCTCTCGCCAGTATTTAGCCTTGGA 916 >seq3519 Length=24458 Score = 73.4 bits (80), Expect = 1e-10 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| | Sbjct 19836 CCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGT 19777 Query 375 GGTCCCCC 382 |||||||| Sbjct 19776 GGTCCCCC 19769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240628299008