Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq7442 212 1e-52
seq2751 208 2e-51
seq1592 208 2e-51
seq65794 201 3e-49
seq910 100 7e-19
seq1674 87.8 4e-15
seq1397 80.6 6e-13
>seq7442
Length=2782
Score = 212 bits (234), Expect = 1e-52
Identities = 300/410 (73%), Gaps = 19/410 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 1213 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1272
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 1273 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1332
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | || | ||| ||||| | ||| | |
Sbjct 1333 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCGCGCGGAGGCTTCTC-ACTAAGGC 1388
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | ||| | ||||||||||||| ||| |||| |
Sbjct 1389 GGAACGCTCCCCTACCGATGTCTTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1444
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 1445 CCCCG-TGCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1503
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCC-TTTCCCACT 350
| |||||||||| | ||||||||||||| ||||| ||| | | || ||| ||| ||||
Sbjct 1504 GGTGGCTGCTTCTAGGCCAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTTAGCACT 1563
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 1564 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1613
>seq2751
Length=47027
Score = 208 bits (230), Expect = 2e-51
Identities = 299/410 (73%), Gaps = 20/410 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 33439 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 33498
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 33499 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 33558
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | |||| | | ||| || || |||
Sbjct 33559 ACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAACA 33613
Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230
|| ||||||||||||| | ||| | ||||||||||||| || ||||
Sbjct 33614 CGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA- 33669
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||
Sbjct 33670 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 33728
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|| |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||
Sbjct 33729 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 33788
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 33789 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 33838
>seq1592
Length=309605
Score = 208 bits (230), Expect = 2e-51
Identities = 299/410 (73%), Gaps = 20/410 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 271610 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 271669
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 271670 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 271729
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176
||||||| || ||| || |||| || | | |||| | | ||| || || |||
Sbjct 271730 ACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAACA 271784
Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230
|| ||||||||||||| | ||| | ||||||||||||| || ||||
Sbjct 271785 CGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA- 271840
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||
Sbjct 271841 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 271899
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|| |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||
Sbjct 271900 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 271959
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 271960 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 272009
>seq65794
Length=619
Score = 201 bits (222), Expect = 3e-49
Identities = 299/411 (73%), Gaps = 21/411 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCC-GACTCACCCAGGGCAGACAAACTTGAC 59
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 210 CGACTACGCCTTTCGGCCTGATCTTAGGCCCATGACTCACCCTTCGTGGACGAACCTTGC 269
Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 270 GGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCC 329
Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGAC 175
||||||| || ||| || |||| || | | |||| | | ||| || || ||
Sbjct 330 GACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAAC 384
Query 176 ACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTA 229
||| ||||||||||||| | ||| | ||||||||||||| || ||||
Sbjct 385 ACGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA 441
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289
|||||| | ||| ||||||| | | || || |||||||||||||||||||||||||
Sbjct 442 -GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCA 499
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
||| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||
Sbjct 500 AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCAC 559
Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|||| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 560 TGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 610
>seq910
Length=344653
Score = 100 bits (110), Expect = 7e-19
Identities = 84/102 (82%), Gaps = 6/102 (6%)
Strand=Plus/Minus
Query 226 CTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTACGCAC 282
||| ||||| | |||||| |||| || ||| || |||||||||||||||||||
Sbjct 73781 CTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTACGCTT 73725
Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324
|||| ||||||||||||||||||||| ||||||||||||||
Sbjct 73724 TCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTC 73683
>seq1674
Length=239535
Score = 87.8 bits (96), Expect = 4e-15
Identities = 77/95 (81%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286
|| ||||||| | |||| ||||||| | | || || ||||||||||||| ||||||||
Sbjct 104367 TTTAGCCCCGTT-CATTTTCGGCGCATGAGCGCTCGATCAGTGAGCTATTAAGCACTCTT 104425
Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321
|||||| |||||||||| | || ||||| ||| ||
Sbjct 104426 TCAAGGGTGGCTGCTTCTAGGCGAACCTTCTGTTT 104460
>seq1397
Length=784450
Score = 80.6 bits (88), Expect = 6e-13
Identities = 53/59 (90%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317
|| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct 604964 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCT 604906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176678386688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |