Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq7442 212 1e-52 seq2751 208 2e-51 seq1592 208 2e-51 seq65794 201 3e-49 seq910 100 7e-19 seq1674 87.8 4e-15 seq1397 80.6 6e-13 >seq7442 Length=2782 Score = 212 bits (234), Expect = 1e-52 Identities = 300/410 (73%), Gaps = 19/410 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1213 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1272 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 1273 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1332 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || | ||| ||||| | ||| | | Sbjct 1333 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCGCGCGGAGGCTTCTC-ACTAAGGC 1388 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | ||| | ||||||||||||| ||| |||| | Sbjct 1389 GGAACGCTCCCCTACCGATGTCTTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1444 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 1445 CCCCG-TGCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1503 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCC-TTTCCCACT 350 | |||||||||| | ||||||||||||| ||||| ||| | | || ||| ||| |||| Sbjct 1504 GGTGGCTGCTTCTAGGCCAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTTAGCACT 1563 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1564 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1613 >seq2751 Length=47027 Score = 208 bits (230), Expect = 2e-51 Identities = 299/410 (73%), Gaps = 20/410 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 33439 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 33498 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 33499 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 33558 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | |||| | | ||| || || ||| Sbjct 33559 ACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAACA 33613 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | ||| | ||||||||||||| || |||| Sbjct 33614 CGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA- 33669 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 33670 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 33728 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||| Sbjct 33729 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 33788 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 33789 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 33838 >seq1592 Length=309605 Score = 208 bits (230), Expect = 2e-51 Identities = 299/410 (73%), Gaps = 20/410 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 271610 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 271669 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 271670 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 271729 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | |||| | | ||| || || ||| Sbjct 271730 ACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAACA 271784 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | ||| | ||||||||||||| || |||| Sbjct 271785 CGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA- 271840 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 271841 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 271899 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||| Sbjct 271900 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 271959 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 271960 GAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 272009 >seq65794 Length=619 Score = 201 bits (222), Expect = 3e-49 Identities = 299/411 (73%), Gaps = 21/411 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCC-GACTCACCCAGGGCAGACAAACTTGAC 59 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 210 CGACTACGCCTTTCGGCCTGATCTTAGGCCCATGACTCACCCTTCGTGGACGAACCTTGC 269 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 270 GGAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCC 329 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGAC 175 ||||||| || ||| || |||| || | | |||| | | ||| || || || Sbjct 330 GACATTCTCGCTTCCGCTTCG--TCCA--ACGCGGCTCACGCACGCGTTTCTCC-CTAAC 384 Query 176 ACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||| ||||||||||||| | ||| | ||||||||||||| || |||| Sbjct 385 ACGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACAGCTTCGGCAGACCGCTTA 441 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 |||||| | ||| ||||||| | | || || ||||||||||||||||||||||||| Sbjct 442 -GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCA 499 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 ||| |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||| Sbjct 500 AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCAC 559 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 560 TGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 610 >seq910 Length=344653 Score = 100 bits (110), Expect = 7e-19 Identities = 84/102 (82%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 226 CTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTACGCAC 282 ||| ||||| | |||||| |||| || ||| || ||||||||||||||||||| Sbjct 73781 CTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTACGCTT 73725 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||| ||||||||||||||||||||| |||||||||||||| Sbjct 73724 TCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTC 73683 >seq1674 Length=239535 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 227 TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTT 286 || ||||||| | |||| ||||||| | | || || ||||||||||||| |||||||| Sbjct 104367 TTTAGCCCCGTT-CATTTTCGGCGCATGAGCGCTCGATCAGTGAGCTATTAAGCACTCTT 104425 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||| |||||||||| | || ||||| ||| || Sbjct 104426 TCAAGGGTGGCTGCTTCTAGGCGAACCTTCTGTTT 104460 >seq1397 Length=784450 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 || ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct 604964 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCT 604906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176678386688