Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq31236 127 2e-27
seq915 127 2e-27
seq22649 125 6e-27
seq2378 125 6e-27
seq897 82.4 6e-14
>seq31236
Length=1467
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 305 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 364
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 365 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 424
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 425 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 464
>seq915
Length=368017
Score = 127 bits (140), Expect = 2e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| |||| ||||||| |||||||||
Sbjct 288229 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 288170
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 288169 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 288110
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 288109 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 288070
>seq22649
Length=1522
Score = 125 bits (138), Expect = 6e-27
Identities = 125/161 (78%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| |
Sbjct 677 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 619
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || ||| |||| | |||||||| ||||||| |||| |||||||||||||
Sbjct 618 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 559
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| |||||||||||||||||||||||||||| || | ||||
Sbjct 558 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 518
>seq2378
Length=68098
Score = 125 bits (138), Expect = 6e-27
Identities = 125/161 (78%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| |
Sbjct 10353 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACA 10295
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || ||| |||| | |||||||| ||||||| |||| |||||||||||||
Sbjct 10294 GCCTTGCTTCCCATTGTAATTTCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 10235
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| |||||||||||||||||||||||||||| || | ||||
Sbjct 10234 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 10194
>seq897
Length=384435
Score = 82.4 bits (90), Expect = 6e-14
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||| ||||||||||||||| |||||||||||||||||||||||||||| || | ||||
Sbjct 257044 GCCCAGCCCATAAGGGCCATGTGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 257103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415684604140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |