Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq22854 163 5e-38 seq31236 154 2e-35 seq2378 134 2e-29 seq1488 116 6e-24 seq255 105 1e-20 seq780 91.5 2e-16 seq4206 78.8 2e-12 >seq22854 Length=1460 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 1067 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1008 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 1007 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 948 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 947 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 888 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 887 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 828 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 827 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 783 >seq31236 Length=1467 Score = 154 bits (170), Expect = 2e-35 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 858 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 917 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 918 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 977 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 978 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 1037 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 1038 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 1097 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||||| ||||||||| ||||||||| Sbjct 1098 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 1135 >seq2378 Length=68098 Score = 134 bits (148), Expect = 2e-29 Identities = 204/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 9468 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 9409 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| || | || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 9408 TCCTTCGTAGATTTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 9349 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 |||| || ||||| | ||| || | | || | | | |||||| | Sbjct 9348 CCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 9294 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 9293 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 9234 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 9233 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 9186 >seq1488 Length=468551 Score = 116 bits (128), Expect = 6e-24 Identities = 192/276 (70%), Gaps = 1/276 (0%) Strand=Plus/Minus Query 8 TTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCG 67 ||||| || || |||||| | | |||||| || |||||| |||||||| | Sbjct 242403 TTTCGTCTCTTAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTTC 242344 Query 68 TATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAA 127 || ||||||||||||| |||| || |||||| |||| || | | |||| || Sbjct 242343 GATCTCTACGCATTTCAGCGCTCTACCGAAAATTCCCTCTGCCCCTACCGTACTCCAGCT 242284 Query 128 AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTC 187 | |||| || | | | | |||||||||| | ||| || | ||||| Sbjct 242283 TGGTATTTTCCAACGTTGTCCA-GGGTTGAGCCTTGGGATTTGACGACGGACTTAAAAAG 242225 Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || || Sbjct 242224 CCACCTACATACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTCCC 242165 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||| ||||||||| |||||||| Sbjct 242164 GCGGCTGCTGGCACAGAGTTAGCCGATACTTATTCC 242129 >seq255 Length=403878 Score = 105 bits (116), Expect = 1e-20 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | ||||| || |||||| | |||||| ||| Sbjct 388881 GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCC 388940 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 388941 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 389000 Query 271 CGTGGCTTATTCC 283 || ||||||||| Sbjct 389001 CGATGCTTATTCC 389013 >seq780 Length=650642 Score = 91.5 bits (100), Expect = 2e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| ||||| | |||||||||||||||| ||| || |||||||||||||||||| Sbjct 273509 CTTTACGTCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCA 273568 Query 261 CGTAGTTAGCCGTGGCTTATTCC 283 | ||||||||| ||||||||| Sbjct 273569 CAGAGTTAGCCGATGCTTATTCC 273591 >seq4206 Length=13527 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/91 (79%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC----GTAT 243 |||||||| ||||||||| |||| | | |||| | ||| |||||| || | || | Sbjct 4448 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCCCCCGTCT 4507 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTG 274 ||||||| ||||||||||| ||||||||||| Sbjct 4508 TACCGCGACTGCTGGCACGGAGTTAGCCGTG 4538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828171634402