Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq22854 163 5e-38
seq31236 154 2e-35
seq2378 134 2e-29
seq1488 116 6e-24
seq255 105 1e-20
seq780 91.5 2e-16
seq4206 78.8 2e-12
>seq22854
Length=1460
Score = 163 bits (180), Expect = 5e-38
Identities = 207/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 1067 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1008
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 1007 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 948
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 947 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 888
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 887 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 828
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 827 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 783
>seq31236
Length=1467
Score = 154 bits (170), Expect = 2e-35
Identities = 201/278 (72%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 858 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 917
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 918 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 977
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 978 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 1037
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || |||
Sbjct 1038 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 1097
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
|||||||||||||||| ||||||||| |||||||||
Sbjct 1098 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 1135
>seq2378
Length=68098
Score = 134 bits (148), Expect = 2e-29
Identities = 204/288 (71%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| || ||||||| || |||| | | |||||||| ||| ||
Sbjct 9468 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 9409
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| || | || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 9408 TCCTTCGTAGATTTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 9349
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
|||| || ||||| | ||| || | | || | | | |||||| |
Sbjct 9348 CCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 9294
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 9293 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 9234
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 9233 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 9186
>seq1488
Length=468551
Score = 116 bits (128), Expect = 6e-24
Identities = 192/276 (70%), Gaps = 1/276 (0%)
Strand=Plus/Minus
Query 8 TTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCG 67
||||| || || |||||| | | |||||| || |||||| |||||||| |
Sbjct 242403 TTTCGTCTCTTAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTTC 242344
Query 68 TATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAA 127
|| ||||||||||||| |||| || |||||| |||| || | | |||| ||
Sbjct 242343 GATCTCTACGCATTTCAGCGCTCTACCGAAAATTCCCTCTGCCCCTACCGTACTCCAGCT 242284
Query 128 AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTC 187
| |||| || | | | | |||||||||| | ||| || | |||||
Sbjct 242283 TGGTATTTTCCAACGTTGTCCA-GGGTTGAGCCTTGGGATTTGACGACGGACTTAAAAAG 242225
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||| | |||||||||||||||| ||| || || ||
Sbjct 242224 CCACCTACATACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTCCC 242165
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
|||||||||||||| ||||||||| ||||||||
Sbjct 242164 GCGGCTGCTGGCACAGAGTTAGCCGATACTTATTCC 242129
>seq255
Length=403878
Score = 105 bits (116), Expect = 1e-20
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
||||||||||| | ||| || | ||||| || |||||| | |||||| |||
Sbjct 388881 GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCC 388940
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | |||||||||||||||| ||| || ||||||||||||||||||| |||||||
Sbjct 388941 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 389000
Query 271 CGTGGCTTATTCC 283
|| |||||||||
Sbjct 389001 CGATGCTTATTCC 389013
>seq780
Length=650642
Score = 91.5 bits (100), Expect = 2e-16
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260
|||||| ||||| | |||||||||||||||| ||| || ||||||||||||||||||
Sbjct 273509 CTTTACGTCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCA 273568
Query 261 CGTAGTTAGCCGTGGCTTATTCC 283
| ||||||||| |||||||||
Sbjct 273569 CAGAGTTAGCCGATGCTTATTCC 273591
>seq4206
Length=13527
Score = 78.8 bits (86), Expect = 2e-12
Identities = 72/91 (79%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC----GTAT 243
|||||||| ||||||||| |||| | | |||| | ||| |||||| || | || |
Sbjct 4448 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCCCCCGTCT 4507
Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTG 274
||||||| ||||||||||| |||||||||||
Sbjct 4508 TACCGCGACTGCTGGCACGGAGTTAGCCGTG 4538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828171634402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |