Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq44 268 1e-69 seq2751 255 9e-66 seq1511 250 4e-64 seq7442 127 3e-27 seq218 122 1e-25 seq2551 93.3 7e-17 seq1592 91.5 2e-16 seq224 91.5 2e-16 seq66978 82.4 1e-13 seq30 77.0 5e-12 >seq44 Length=1175378 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 967254 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 967195 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 967194 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 967135 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 967134 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 967075 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 967074 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 967015 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 967014 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 966982 >seq2751 Length=47027 Score = 255 bits (282), Expect = 9e-66 Identities = 221/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| ||||| |||||| ||| |||| ||| |||||| Sbjct 31712 GGTGGGCTTACTACTTAGATGCTTTCAGAAGTTATCCGCTCCGCACTTGGCTACCCAGCG 31771 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 31772 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 31831 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| | Sbjct 31832 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACA 31891 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||| ||||||||||| || | Sbjct 31892 ACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGTCCAACCCTTGGAACAT 31951 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 31952 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 31984 >seq1511 Length=404814 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 239912 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 239971 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 239972 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 240031 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| ||||| ||||| ||||||||| || Sbjct 240032 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACGGGATATGGACCAAACTGTCTCACG 240091 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||||||||||||||| ||||||| |||| || | Sbjct 240092 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCTTTGGAACAT 240151 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 240152 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 240184 >seq7442 Length=2782 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || Sbjct 2 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAC 61 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| |||||||||| | || |||||||||||| Sbjct 62 ATACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 96 >seq218 Length=463666 Score = 122 bits (134), Expect = 1e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 || |||||||| |||| ||||||||| |||||| ||| | | || ||| ||| ||||||| Sbjct 285668 GGAACCGAACTATCTCACGACGTTCTAAACCCAACTCACATACCACTTGAATCGGCGAAC 285727 Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 285728 AACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 285779 >seq2551 Length=59699 Score = 93.3 bits (102), Expect = 7e-17 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93 |||||| ||| |||| ||| |||||| | | | | |||| | ||||||| |||||| Sbjct 32690 TTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAG 32631 Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153 |||| |||| ||||||||||||||||||| ||| || ||||||||| || |||||| Sbjct 32630 AGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCC 32571 Query 154 ACG 156 || Sbjct 32570 GCG 32568 >seq1592 Length=309605 Score = 91.5 bits (100), Expect = 2e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||||||||||||||||||||||||| || |||| |||||||||| | || || Sbjct 270421 CCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGA 270480 Query 266 GCCGACATCG 275 |||||||||| Sbjct 270481 GCCGACATCG 270490 >seq224 Length=468181 Score = 91.5 bits (100), Expect = 2e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||||||||||||||||||||||||| || |||| |||||||||| | || || Sbjct 5504 CCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGA 5563 Query 266 GCCGACATCG 275 |||||||||| Sbjct 5564 GCCGACATCG 5573 >seq66978 Length=606 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || || Sbjct 251 CCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGA 192 Query 266 GCCGACATCG 275 | |||||||| Sbjct 191 GTCGACATCG 182 >seq30 Length=2501920 Score = 77.0 bits (84), Expect = 5e-12 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38 TCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGT 97 |||| | | ||||||||| ||| || ||| |||||| ||||| ||| ||||| | || Sbjct 1850889 TCCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAAGT 1850830 Query 98 TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 | | ||| ||| |||||||||||||| || ||||||| || | |||| Sbjct 1850829 TGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCT 1850780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780208026232