Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq44 268 1e-69
seq2751 255 9e-66
seq1511 250 4e-64
seq7442 127 3e-27
seq218 122 1e-25
seq2551 93.3 7e-17
seq1592 91.5 2e-16
seq224 91.5 2e-16
seq66978 82.4 1e-13
seq30 77.0 5e-12
>seq44
Length=1175378
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 967254 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 967195
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 967194 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 967135
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 967134 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 967075
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 967074 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 967015
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 967014 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 966982
>seq2751
Length=47027
Score = 255 bits (282), Expect = 9e-66
Identities = 221/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| ||||| |||||| ||| |||| ||| ||||||
Sbjct 31712 GGTGGGCTTACTACTTAGATGCTTTCAGAAGTTATCCGCTCCGCACTTGGCTACCCAGCG 31771
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 31772 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 31831
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| |
Sbjct 31832 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACA 31891
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||| ||||||||||| || |
Sbjct 31892 ACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGTCCAACCCTTGGAACAT 31951
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 31952 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 31984
>seq1511
Length=404814
Score = 250 bits (276), Expect = 4e-64
Identities = 220/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 239912 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 239971
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 239972 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 240031
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| ||||| ||||| ||||||||| ||
Sbjct 240032 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACGGGATATGGACCAAACTGTCTCACG 240091
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || |||||||||||||||| ||||||| |||| || |
Sbjct 240092 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCTTTGGAACAT 240151
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 240152 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 240184
>seq7442
Length=2782
Score = 127 bits (140), Expect = 3e-27
Identities = 85/95 (89%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 2 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAC 61
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||| |||||||||| | || ||||||||||||
Sbjct 62 ATACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 96
>seq218
Length=463666
Score = 122 bits (134), Expect = 1e-25
Identities = 94/112 (84%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 164 GGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223
|| |||||||| |||| ||||||||| |||||| ||| | | || ||| ||| |||||||
Sbjct 285668 GGAACCGAACTATCTCACGACGTTCTAAACCCAACTCACATACCACTTGAATCGGCGAAC 285727
Query 224 AGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| || |||||||||||||| ||||| |||||||||| || ||| ||||||||
Sbjct 285728 AACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 285779
>seq2551
Length=59699
Score = 93.3 bits (102), Expect = 7e-17
Identities = 95/123 (77%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93
|||||| ||| |||| ||| |||||| | | | | |||| | ||||||| ||||||
Sbjct 32690 TTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAG 32631
Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153
|||| |||| ||||||||||||||||||| ||| || ||||||||| || ||||||
Sbjct 32630 AGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCC 32571
Query 154 ACG 156
||
Sbjct 32570 GCG 32568
>seq1592
Length=309605
Score = 91.5 bits (100), Expect = 2e-16
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265
|| ||||||||||||||||||||||||||||| || |||| |||||||||| | || ||
Sbjct 270421 CCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGA 270480
Query 266 GCCGACATCG 275
||||||||||
Sbjct 270481 GCCGACATCG 270490
>seq224
Length=468181
Score = 91.5 bits (100), Expect = 2e-16
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265
|| ||||||||||||||||||||||||||||| || |||| |||||||||| | || ||
Sbjct 5504 CCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGA 5563
Query 266 GCCGACATCG 275
||||||||||
Sbjct 5564 GCCGACATCG 5573
>seq66978
Length=606
Score = 82.4 bits (90), Expect = 1e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || ||
Sbjct 251 CCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGA 192
Query 266 GCCGACATCG 275
| ||||||||
Sbjct 191 GTCGACATCG 182
>seq30
Length=2501920
Score = 77.0 bits (84), Expect = 5e-12
Identities = 83/110 (75%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 38 TCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGT 97
|||| | | ||||||||| ||| || ||| |||||| ||||| ||| ||||| | ||
Sbjct 1850889 TCCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAAGT 1850830
Query 98 TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147
| | ||| ||| |||||||||||||| || ||||||| || | ||||
Sbjct 1850829 TGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCT 1850780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780208026232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |