Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq22854 273 5e-71 seq31236 268 2e-69 seq1488 226 7e-57 seq2378 217 4e-54 seq255 120 7e-25 seq4206 86.0 2e-14 seq2125 84.2 5e-14 seq780 84.2 5e-14 seq1070 82.4 2e-13 seq37 80.6 6e-13 >seq22854 Length=1460 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 787 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 846 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 847 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 906 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 907 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 966 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 967 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 1026 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 1027 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 1086 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 1087 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 1145 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| | ||| ||||| ||||||| || ||||||||||| Sbjct 1146 GTGCAGTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 1190 >seq31236 Length=1467 Score = 268 bits (296), Expect = 2e-69 Identities = 299/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 1130 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 1071 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || ||||||| | || ||| | | || Sbjct 1070 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGG 1011 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 1010 CTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAAT 951 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||||||||||| || | | |||||||| |||||| || | Sbjct 950 TTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCT 891 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| ||||||| || ||||||||||||| Sbjct 890 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 831 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| ||||||||||||| |||||||| | | | ||| || | | | ||| Sbjct 830 CAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAGTG 772 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||||| ||||||| || ||||||||||| Sbjct 771 TTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 735 >seq1488 Length=468551 Score = 226 bits (250), Expect = 7e-57 Identities = 247/327 (76%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||| || || ||| || ||||||||||||||| | Sbjct 242140 CGGCTAACTCTGTGCCAGCAGCCGCGGGAAGACAGAGGATGCAAGCGTTATCCGGAATGA 242199 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| || |||||||| || ||||||| | || ||| | | |||||||| Sbjct 242200 TTGGGCGTAAAGCGTATGTAGGTGGCTTTTTAAGTCCGTCGTCAAATCCCAAGGCTCAAC 242259 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 || || || | || |||| | | ||| |||| | | ||||||| |||||| | Sbjct 242260 CCTGG-ACAACGTTGGAAAATACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTTCGG 242318 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 | |||| ||||||||||||| || | |||||||| |||||| || |||||| Sbjct 242319 TAGAGCGCTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCGAAAGCACTCTGCTGGG 242378 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | | ||||||||| || ||||| | ||||||| || |||||||||||||| |||| Sbjct 242379 CCGACACTGACACTAAGAGACGAAATCTAGGGGAGCGAATGGGATTAGATACCCTAGTAG 242438 Query 319 TCCACGCCGTAAACGATGAATACTAGG 345 ||| ||||||||||||| |||||||| Sbjct 242439 TCCTAGCCGTAAACGATGGATACTAGG 242465 >seq2378 Length=68098 Score = 217 bits (240), Expect = 4e-54 Identities = 254/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 9182 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 9241 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 9242 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 9301 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || | ||| Sbjct 9302 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGGGTGAGAC 9355 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || | || | | |||||| ||| Sbjct 9356 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAAATCTACGAAGGAACGCCAA 9415 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 9416 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 9475 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 9476 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 9515 >seq255 Length=403878 Score = 120 bits (132), Expect = 7e-25 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 389008 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 388949 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || ||||||| | || ||| | | || Sbjct 388948 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGG 388889 Query 133 CTCAACCCCGG 143 |||||||| || Sbjct 388888 CTCAACCCTGG 388878 >seq4206 Length=13527 Score = 86.0 bits (94), Expect = 2e-14 Identities = 73/90 (81%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG----CTAGCGTTATCCGGA 74 ||||||||| ||||||||||| |||||||| ||| ||||| | || ||| | |||| Sbjct 4536 CGGCTAACTCCGTGCCAGCAGTCGCGGTAAGACGGGGGGGGGGGGCAAGTGTTCTTCGGA 4477 Query 75 ATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||||||||||||||| |||||| ||| Sbjct 4476 ATGACTGGGCGTAAAGGGCACGTAGGCGGT 4447 >seq2125 Length=90154 Score = 84.2 bits (92), Expect = 5e-14 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 ||| |||| | ||||| |||||||| |||| |||| | ||||| ||| || ||| Sbjct 85687 GTGTAATTTCGTGTGTAAGGGTGAAATCCGTAAATATACGAAGGAATGCCAAAAGCAAAG 85628 Query 246 GCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 | || ||| | || | ||| || || |||| | |||||||| ||||||||| Sbjct 85627 GTAACTCTTTGGGTCCCTATC-GACGCTTGGGTGAGAAAACATGGGGAGCGAACAGGATT 85569 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| |||||||||| |||||| ||||||| Sbjct 85568 AGATACCTTGGTAGTCCATGCCGTATACGATGA 85536 >seq780 Length=650642 Score = 84.2 bits (92), Expect = 5e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 273586 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 273527 Query 73 GAATTACTGGGCGTAAAGGGT 93 |||| | ||| ||||||| || Sbjct 273526 GAATGATTGGACGTAAAGCGT 273506 >seq1070 Length=219458 Score = 82.4 bits (90), Expect = 2e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||| Sbjct 140930 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCT 140989 >seq37 Length=1785839 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322 |||||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 820599 ACTGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCA 820541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202258351616