Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq1592 185 3e-44
seq7442 181 4e-43
seq1545 159 1e-36
seq2751 132 2e-28
seq33 127 7e-27
seq65794 118 4e-24
seq43 107 6e-21
>seq1592
Length=309605
Score = 185 bits (204), Expect = 3e-44
Identities = 394/582 (68%), Gaps = 36/582 (6%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||||
Sbjct 272361 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 272302
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 272301 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 272242
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 272241 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 272182
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| |||||| |||||||||
Sbjct 272181 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 272127
Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287
|| ||| | | ||| ||||||| | |||||||| |||| |
Sbjct 272126 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 272069
Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336
| || | || | || |||||| ||||| | |||| | | | |
Sbjct 272068 CCTCCAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 272009
Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396
|||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | ||
Sbjct 272008 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 271951
Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456
|| || | ||| ||||||| |||| ||| || | |||||||||| | || |||||
Sbjct 271950 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 271892
Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516
|||||||| |||||||| ||||| || ||| || || | |||| |||| ||
Sbjct 271891 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGGT 271833
Query 517 CTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558
|| ||||||| ||||||| | | ||||||||||||||
Sbjct 271832 CTGCCGAAGCTGTGGGATGTAAAAAAACATCGGTAGGGGAGC 271791
>seq7442
Length=2782
Score = 181 bits (200), Expect = 4e-43
Identities = 397/586 (68%), Gaps = 43/586 (7%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||||
Sbjct 1965 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 1906
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 1905 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 1846
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 1845 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1786
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| |||||| |||||||||
Sbjct 1785 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1731
Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287
|| ||| | | ||| ||||||| | |||||||| |||| |
Sbjct 1730 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 1673
Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336
| || | || | || |||||| ||||| | |||| ||| | |
Sbjct 1672 CCCCAAAATCACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTCCATCGTC 1613
Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT--TAAACT 394
|||||| || | ||||| | ||||||||||||| ||||||| ||| ||| |||
Sbjct 1612 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGCTAA--- 1556
Query 395 AACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAA 454
|| || || | ||| ||||||| |||| |||||| | |||||||||| | || |||
Sbjct 1555 AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTGGCCTAGAAGCAGCCA-CCCTTGAAA 1497
Query 455 GAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTT 514
|||||||||| |||||||| ||||| || ||| || || |||| ||||
Sbjct 1496 GAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGCACGGG-GCTAAGCG 1438
Query 515 GTCTACCGAAGCAGTGGGATCATTTATATG--ATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | | | ||||||||||||||
Sbjct 1437 ATCTGCCGAAGCTGTGGGAT--GTAAAAAGACATCGGTAGGGGAGC 1394
>seq1545
Length=361571
Score = 159 bits (176), Expect = 1e-36
Identities = 192/258 (74%), Gaps = 10/258 (4%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | ||||||| ||||| |||| | ||| | || |||| ||| ||||
Sbjct 65888 GACCCGAAACCGATTGATCTAGCCATGAGCAGGTTAAAGAGAGCTCTAACGGGCCTTGGA 65947
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 65948 GGACCGAACCCACGTATGTGGAAAAATTCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 66007
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 66008 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 66065
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266
| || | | ||||||||||| |||||||| | |||| || ||||||||
Sbjct 66066 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 66125
Query 267 CCATTGCAAACTCCGAAT 284
|| | |||||||||||
Sbjct 66126 CCCAGGGAAACTCCGAAT 66143
>seq2751
Length=47027
Score = 132 bits (146), Expect = 2e-28
Identities = 141/186 (76%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||||
Sbjct 34255 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 34196
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 34195 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 34136
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 34135 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 34076
Query 182 CCGAAA 187
||||||
Sbjct 34075 CCGAAA 34070
Score = 122 bits (134), Expect = 3e-25
Identities = 181/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365
|||||| ||||| | |||| | | | ||||||| || | ||||| | ||||||
Sbjct 33868 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 33809
Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425
||||||| ||||||| ||| ||| | | || || || | ||| ||||||| ||||
Sbjct 33808 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 33751
Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485
||| || | |||||||||| | || ||||||||||||| |||||||| ||||| ||
Sbjct 33750 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 33692
Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGA 545
||| || || | |||| |||| |||| ||||||| ||||||| | | |
Sbjct 33691 TTGCGCCGAAGATGAACGGG-GCTAAGCGGTCTGCCGAAGCTGTGGGATGTAAAAAAACA 33633
Query 546 TCGGTAGGGGAGC 558
|||||||||||||
Sbjct 33632 TCGGTAGGGGAGC 33620
>seq33
Length=2198749
Score = 127 bits (140), Expect = 7e-27
Identities = 131/170 (77%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 985655 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 985714
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| || ||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 985715 GGACCAAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 985774
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203
|| ||| | | |||||||||| || ||||| |||||| |||| ||
Sbjct 985775 AACCAAGAACGTATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGC 985824
>seq65794
Length=619
Score = 118 bits (130), Expect = 4e-24
Identities = 162/223 (73%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | |
Sbjct 610 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 553
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||
Sbjct 552 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 494
Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515
||||||||| |||||||| ||||| || ||| || || | |||| |||| |
Sbjct 493 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGG 435
Query 516 TCTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | ||||||||||||||
Sbjct 434 TCTGCCGAAGCTGTGGGATGTAAAAAAACATCGGTAGGGGAGC 392
>seq43
Length=1379160
Score = 107 bits (118), Expect = 6e-21
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94
|||||||| | |||||||| ||||| ||| |||||| | ||| | || |||||
Sbjct 224883 GACCCGAACCTGGGTGATCTATCCATGACCATGATGAAACTTGGGTGAAACTAAGTGGAG 224942
Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154
||| ||||| ||| |||||||| ||| | ||||||| ||||| ||||||||||| | |
Sbjct 224943 GTCTGAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAATGACA 225002
Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186
| ||| | || |||||||||||| |||||
Sbjct 225003 CTCGAACCTAGAGCTAGCTGGTTCTCCCCGAA 225034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1688277685248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |