Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1592 185 3e-44 seq7442 181 4e-43 seq1545 159 1e-36 seq2751 132 2e-28 seq33 127 7e-27 seq65794 118 4e-24 seq43 107 6e-21 >seq1592 Length=309605 Score = 185 bits (204), Expect = 3e-44 Identities = 394/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 272361 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 272302 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 272301 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 272242 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 272241 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 272182 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 272181 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 272127 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 272126 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 272069 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| | | | | Sbjct 272068 CCTCCAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 272009 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 272008 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 271951 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 271950 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 271892 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| || Sbjct 271891 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGGT 271833 Query 517 CTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 || ||||||| ||||||| | | |||||||||||||| Sbjct 271832 CTGCCGAAGCTGTGGGATGTAAAAAAACATCGGTAGGGGAGC 271791 >seq7442 Length=2782 Score = 181 bits (200), Expect = 4e-43 Identities = 397/586 (68%), Gaps = 43/586 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 1965 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 1906 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 1905 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 1846 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 1845 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1786 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 1785 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1731 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 1730 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 1673 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| ||| | | Sbjct 1672 CCCCAAAATCACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTCCATCGTC 1613 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT--TAAACT 394 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| ||| Sbjct 1612 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGCTAA--- 1556 Query 395 AACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAA 454 || || || | ||| ||||||| |||| |||||| | |||||||||| | || ||| Sbjct 1555 AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTGGCCTAGAAGCAGCCA-CCCTTGAAA 1497 Query 455 GAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTT 514 |||||||||| |||||||| ||||| || ||| || || |||| |||| Sbjct 1496 GAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGCACGGG-GCTAAGCG 1438 Query 515 GTCTACCGAAGCAGTGGGATCATTTATATG--ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | | | |||||||||||||| Sbjct 1437 ATCTGCCGAAGCTGTGGGAT--GTAAAAAGACATCGGTAGGGGAGC 1394 >seq1545 Length=361571 Score = 159 bits (176), Expect = 1e-36 Identities = 192/258 (74%), Gaps = 10/258 (4%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | ||||||| ||||| |||| | ||| | || |||| ||| |||| Sbjct 65888 GACCCGAAACCGATTGATCTAGCCATGAGCAGGTTAAAGAGAGCTCTAACGGGCCTTGGA 65947 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| |||||||| |||||||| ||||| |||||||||||||| Sbjct 65948 GGACCGAACCCACGTATGTGGAAAAATTCGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 66007 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 66008 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 66065 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || |||||||| Sbjct 66066 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAAC 66125 Query 267 CCATTGCAAACTCCGAAT 284 || | ||||||||||| Sbjct 66126 CCCAGGGAAACTCCGAAT 66143 >seq2751 Length=47027 Score = 132 bits (146), Expect = 2e-28 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 34255 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 34196 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 34195 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 34136 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 34135 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 34076 Query 182 CCGAAA 187 |||||| Sbjct 34075 CCGAAA 34070 Score = 122 bits (134), Expect = 3e-25 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 33868 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 33809 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 33808 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 33751 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 33750 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 33692 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGA 545 ||| || || | |||| |||| |||| ||||||| ||||||| | | | Sbjct 33691 TTGCGCCGAAGATGAACGGG-GCTAAGCGGTCTGCCGAAGCTGTGGGATGTAAAAAAACA 33633 Query 546 TCGGTAGGGGAGC 558 ||||||||||||| Sbjct 33632 TCGGTAGGGGAGC 33620 >seq33 Length=2198749 Score = 127 bits (140), Expect = 7e-27 Identities = 131/170 (77%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 985655 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 985714 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || || ||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 985715 GGACCAAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 985774 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | | |||||||||| || ||||| |||||| |||| || Sbjct 985775 AACCAAGAACGTATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGC 985824 >seq65794 Length=619 Score = 118 bits (130), Expect = 4e-24 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 610 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 553 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||||| |||| ||| || | |||||||||| | || |||| Sbjct 552 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 494 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 493 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGG 435 Query 516 TCTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | |||||||||||||| Sbjct 434 TCTGCCGAAGCTGTGGGATGTAAAAAAACATCGGTAGGGGAGC 392 >seq43 Length=1379160 Score = 107 bits (118), Expect = 6e-21 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||| |||||| | ||| | || ||||| Sbjct 224883 GACCCGAACCTGGGTGATCTATCCATGACCATGATGAAACTTGGGTGAAACTAAGTGGAG 224942 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||| ||||| ||| |||||||| ||| | ||||||| ||||| ||||||||||| | | Sbjct 224943 GTCTGAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGGTGAAATGACA 225002 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186 | ||| | || |||||||||||| ||||| Sbjct 225003 CTCGAACCTAGAGCTAGCTGGTTCTCCCCGAA 225034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688277685248