Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27] 78,262 sequences; 869,795,571 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq7442 120 6e-25 seq1805 93.3 8e-17 seq36 78.8 2e-12 seq1545 77.0 6e-12 >seq7442 Length=2782 Score = 120 bits (132), Expect = 6e-25 Identities = 174/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| |||| Sbjct 2725 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 2666 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 2665 GAGTT-GAAAATAAGCAGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 2613 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 2612 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2556 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 2555 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 2496 Query 249 CCT 251 ||| Sbjct 2495 CCT 2493 >seq1805 Length=178059 Score = 93.3 bits (102), Expect = 8e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 54711 GGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 54770 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 54771 CGGCGAGCGAAATGGGAGCAGCCT 54794 >seq36 Length=1815255 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||| |||||||||| ||||||| ||||||||||| | | | || |||| ||||| Sbjct 1542100 GGCGAATTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCCAAAGCGACTCCCGTAGTAG 1542041 Query 228 TGGCGAGCGAAATGGG 243 ||||||||||||||| Sbjct 1542040 CGGCGAGCGAAATGGG 1542025 >seq1545 Length=361571 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 65193 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 65252 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 65253 GGCGAGCGAGAGCGGAT 65269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917681241792