Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spinacia_20oleracea_20[genbank_20GCA_5F002007265.1_202017-02-27]
78,262 sequences; 869,795,571 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq7442 120 6e-25
seq1805 93.3 8e-17
seq36 78.8 2e-12
seq1545 77.0 6e-12
>seq7442
Length=2782
Score = 120 bits (132), Expect = 6e-25
Identities = 174/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| ||||
Sbjct 2725 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 2666
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 2665 GAGTT-GAAAATAAGCAGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 2613
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 2612 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2556
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 2555 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 2496
Query 249 CCT 251
|||
Sbjct 2495 CCT 2493
>seq1805
Length=178059
Score = 93.3 bits (102), Expect = 8e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
||||||||||||||||| |||||| ||||||||||| ||| | ||||||| |||||
Sbjct 54711 GGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 54770
Query 228 TGGCGAGCGAAATGGGATGAGCCT 251
|||||||||||||||| |||||
Sbjct 54771 CGGCGAGCGAAATGGGAGCAGCCT 54794
>seq36
Length=1815255
Score = 78.8 bits (86), Expect = 2e-12
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
|||||| |||||||||| ||||||| ||||||||||| | | | || |||| |||||
Sbjct 1542100 GGCGAATTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCCAAAGCGACTCCCGTAGTAG 1542041
Query 228 TGGCGAGCGAAATGGG 243
|||||||||||||||
Sbjct 1542040 CGGCGAGCGAAATGGG 1542025
>seq1545
Length=361571
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 65193 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 65252
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 65253 GGCGAGCGAGAGCGGAT 65269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917681241792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |