Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1 161 3e-37 seq5439 132 1e-28 seq11647 77.0 1e-11 >seq1 Length=11827220 Score = 161 bits (178), Expect = 3e-37 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||| | Sbjct 7412801 GGGATGACGTCAAGTCATCATGCCCCTTATGCCTTGGGCGACACACGTGCTACAATGGCC 7412742 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||||||| |||| |||||||| ||| || ||| ||| || ||||||||| Sbjct 7412741 GGGACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCG 7412682 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 ||||| || |||||||||| || ||||||| |||||||||||| Sbjct 7412681 GATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGT 7412638 >seq5439 Length=2537649 Score = 132 bits (146), Expect = 1e-28 Identities = 120/150 (80%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 159 GGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAG 218 |||| ||||||| |||||||| |||||||||| || | |||||||||||||||||||||| Sbjct 1973656 GGTGGTGCATGGCTGTCGTCAACTCGTGTCGTAAGGTATTGGGTTAAGTCCCGCAACGAG 1973597 Query 219 CGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGA 278 ||||||||| ||||||| || || |||| || || || | ||||| |||||| Sbjct 1973596 CGCAACCCTCGTATTTAGTTGACACTGTTGAGTTCGGAAC-CTGAACAGACTGTCGGTGA 1973538 Query 279 CAAACCGGAGGAAGGTGGGGACGACGTCAA 308 || |||||||||| || ||| ||| |||| Sbjct 1973537 GAAGCCGGAGGAAGATGAGGATGACATCAA 1973508 >seq11647 Length=9435 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 293 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 235 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| ||| ||||| Sbjct 234 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCTAGACAT 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503815775040