Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6695 163 2e-35 seq1104 136 3e-27 >seq6695 Length=6602074 Score = 163 bits (180), Expect = 2e-35 Identities = 208/285 (73%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || ||||| || ||||| | |||||||||||| |||| | || Sbjct 4468204 ATGTACAAGAAGGCCGAGGCTTCATTTTGGACTGCCGAGGAGGTCGATCTGTCGCAGGAT 4468263 Query 61156 ATGAATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | || |||||| | | | ||| ||||||| || ||||| | || ||| | Sbjct 4468264 GTTCGCGATTGGGAGATGACCCTGAACGAT-GGTGAACGCCACTTCATCACCCACGTGCT 4468322 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 |||||||| || || |||||||||||||| ||||| | || ||| | Sbjct 4468323 CGCGTTCTTCGCGGCCTCGGACGGTATCGTGTTGGAGAACCTCGCTTCTCGGTTCATGTC 4468382 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 ||| || || || ||||||||||| ||||||||||| ||||| || || |||||| | Sbjct 4468383 GGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCGATCGAGAATAT 4468442 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||||||||||||||| | ||| ||||||| ||||||| ||| Sbjct 4468443 CCACTCGGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGA 4468487 >seq1104 Length=4098138 Score = 136 bits (150), Expect = 3e-27 Identities = 202/285 (71%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || || ||||| | |||||||||||| |||| | || Sbjct 1191902 ATGTACAAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCGCAGGAT 1191843 Query 61156 ATGAATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | || |||||| | | | ||| ||| |||| || ||||| | ||||| | Sbjct 1191842 GTCCGAGATTGGGAGAAGACCCTGAACGA-CGGCGAACGGCACTTCATCACCCATGTCCT 1191784 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||||||||| || |||||||| || ||||| | || ||| | Sbjct 1191783 CGCTTTCTTTGCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCTTCCCGGTTCATGTC 1191724 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || || || ||||||||||| ||||||||||||||||| || || ||||| | Sbjct 1191723 CGATGTTCAGGTCGCGGAGGCGCGTGCATTCTACGGCTTCCAGATCGCGATCGAGAACAT 1191664 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||| ||||||||||||||| | ||| |||| || ||||| | ||| Sbjct 1191663 CCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGA 1191619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397508649185360