Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5510 87.8 2e-12 >seq5510 Length=2415207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 || ||||| || | || || || || || || ||||| || || |||||||| || Sbjct 935668 GAGGATCAGTACATACTGGATGCAGCAGAGGAGGCAGGAGTCGAGCTGCCCTACTCTTGC 935609 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||| || || || || ||||| || ||| | | | || ||||| || |||||| Sbjct 935608 AGGGCTGGCGCATGTTCCACCTGTGCCGGGAAGCTAGCGTCAGGCACTGTCGACCAATCT 935549 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 || || ||||| || || ||| ||||| ||| | |||||||||||| || ||| Sbjct 935548 GACGGCTCGTTCCTTGACGACAATCTCATTGAACAAGGTTATGTCCTGACCTGTGTGGCT 935489 Query 161140 TATCCC 161145 |||||| Sbjct 935488 TATCCC 935483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551291577442200