Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq431 84.2 4e-14 >seq431 Length=160619 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 110666 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 110725 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 110726 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 110781 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 110782 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 110837 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 110838 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 110897 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 110898 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 110957 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 110958 GCCACTCGAAC 110968 Score = 84.2 bits (92), Expect = 4e-14 Identities = 209/311 (67%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68 |||| |||||||||| | |||| ||| || ||||| || |||| || || | | Sbjct 139287 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 139228 Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| ||| | |||||||| ||| | | | | || || |||||| Sbjct 139227 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 139172 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 ||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 139171 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 139116 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | | Sbjct 139115 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 139056 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 139055 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 138996 Query 309 GCCAATCAAAC 319 |||| || ||| Sbjct 138995 GCCACTCGAAC 138985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972795807232