Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7 266 5e-69 >seq7 Length=21614486 Score = 266 bits (294), Expect = 5e-69 Identities = 207/244 (85%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| |||||| || ||||||| | || |||||||||| ||||||||||||| || Sbjct 14425950 TACAAAGGGAAGGGACATAATCAACGCAAACT-GATGACTCGCACTTACTAGGAATT-CC 14426007 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 121 || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14426008 TCATTGAGAACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 14426067 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 | | | |||| ||||| ||| |||||||||||||||| |||||| | |||| ||| Sbjct 14426068 CTGAGCTAGTCGATCAAGGCTATAAACTCGTTGAATACATCTATGTAGCACTCGTGTGGC 14426127 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 || ||||| ||||||||||||| ||||||||||||||||||||| | | || ||| | Sbjct 14426128 CCCAAACATTTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTTCTTAGCTTAAGCGA 14426187 Query 242 CCAT 245 |||| Sbjct 14426188 CCAT 14426191 Score = 253 bits (280), Expect = 3e-65 Identities = 200/237 (84%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| || || ||| ||||||||| || |||||||||| ||||||| ||||| | Sbjct 21440434 GTACAAAAGGTAGAGACATAGTCAACGTAAG-TTGATGACTCATGCTTACTTAGAATT-C 21440377 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | ||||||||||| ||||||| ||||| ||||| |||||||||||| ||||| Sbjct 21440376 CTCGTTAAGGACCAACAATTACAATGATTTATCCTCATCAAAATGAAATTTCAATGATTA 21440317 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||||| ||||||| ||| ||||||||||||||||| |||||| |||||| || Sbjct 21440316 CCCAAGCCTGTCAGCCAAGGCTATACACTCGTTGAATACATCAATGTAGCACGCGTGTGG 21440257 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 |||| ||||||||| | |||||| || |||||||||||||||||||| |||||||| Sbjct 21440256 CCCATAACATCTAAAAGTATCACAAACTTGTTATTGCCTCAAACTTCCTTGGCCTAA 21440200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996860165