Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7 102 1e-19 seq5 86.0 1e-14 >seq7 Length=21614486 Score = 102 bits (112), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| | |||||| |||| || ||||| || ||||| |||||||||||| Sbjct 21436528 GTAATGATTAACAAAGATAGTAAGGGGATTC-GTATTTCATAGTCAGTGGTGAAATTCTT 21436586 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| || | | | ||| || ||| || |||||||||||||||||||||| Sbjct 21436587 GGATTTATGAAAAATGAGCAACTACG-AAGTATTTGCCAAGGATGTTTTCATTAATCA-A 21436644 Query 303 GAACGAAAGTTAGGG 317 ||| ||||||| ||| Sbjct 21436645 GAATGAAAGTTGGGG 21436659 >seq5 Length=39371879 Score = 86.0 bits (94), Expect = 1e-14 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 |||||||||||||||| |||| ||||| || | || | | ||| |||||||||| || Sbjct 1393218 TACTTTGAAAAAATTAAAGTGCTCAAAACATATATATGTTTGGATATATTAGCATGGGAT 1393159 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 | || | | || || | | ||||| |||| || | ||||| |||| |||| | Sbjct 1393158 AGTATCAAAAGA-TTGTGATCCTATTATGTTAGTCTTTAGGATTAAAATAATAATTAGCA 1393100 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 ||| |||||| | | ||||| || ||| | | ||||| || ||||||| || Sbjct 1393099 GGGCTAGTCGAAAATATTTGTATTTCATAATCATAAATAAAATTATTAGATTTATGAAAA 1393040 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 | ||| ||| ||| || |||| |||||||||||||| | | || ||||||| Sbjct 1393039 ATGAACAACTATAAAAATATTTGTCAAGTATGTTTTCATTAATTAAT-CACAAAAGTTA 1392982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196055488