Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq431 271 2e-70 seq3 93.3 1e-16 >seq431 Length=160619 Score = 271 bits (300), Expect = 2e-70 Identities = 315/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 112224 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 112165 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 112164 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 112105 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 112104 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 112045 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 112044 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 111985 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 111984 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 111925 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 111924 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 111888 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 111887 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 111828 Query 418 CCCAACCAC 426 || | |||| Sbjct 111827 CCTACCCAC 111819 Score = 271 bits (300), Expect = 2e-70 Identities = 315/429 (73%), Gaps = 27/429 (6%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 137729 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 137788 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 137789 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 137848 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 137849 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 137908 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||||||| |||||||||||| ||| |||| | Sbjct 137909 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGT 137968 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 137969 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 138028 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 138029 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 138065 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 138066 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 138125 Query 418 CCCAACCAC 426 || | |||| Sbjct 138126 CCTACCCAC 138134 >seq3 Length=36364294 Score = 93.3 bits (102), Expect = 1e-16 Identities = 181/263 (69%), Gaps = 17/263 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| | || || ||| ||| || |||| |||| || | | ||| || Sbjct 28946173 GCATCTTCATAAACATGTCTATTACACCGAATCTCTCTCCGAGATAGTGACTAGATCATT 28946232 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT--AGGACCGT 130 |||| || |||| |||| |||||||| |||| ||||||| | ||| |||||||| Sbjct 28946233 ACGCTTTTTGTGCGAGTCGAAACTTACCT-ACAAAGAATTTCCATTACTTTTAGGACCGT 28946291 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 ||| |||||| ||| || |||||||||| || | | ||| || | || | Sbjct 28946292 TATAGTTACGACCGTGGTCCACCGGGGCTTTCATTCAAAACTT----ATAAC--ACTTCT 28946345 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGT-------CCACTTT-C 242 | ||||| |||| |||| ||||||| |||| | |||||| | ||||||| | Sbjct 28946346 CCTTTTAACTTTCCAGCACTGGGCAGGTGTCAGGCTCTATACATCGTGTTACCACTTTAC 28946405 Query 243 GTGTTTGCAGAGTGCTGTGTTTT 265 |||||||||| ||||||||| Sbjct 28946406 CACTTTGCAGAGTCCTGTGTTTT 28946428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260794565952