Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09]
431 sequences; 324,879,930 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq431 183 6e-44
>seq431
Length=160619
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 112402 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 112461
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 112462 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 112520
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 112521 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 112580
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 112581 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 112630
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 137551 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 137492
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 137491 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 137433
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 137432 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 137373
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 137372 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 137323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982395765856
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |