Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2 129 1e-27 >seq2 Length=41236440 Score = 129 bits (142), Expect = 1e-27 Identities = 184/256 (72%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 22 GTGTAGGGGTGGGTAAAAATGG-AAATT--TGAAATGTTGGGGAGAGTCCGACCCGAATG 78 |||| ||| | || ||| |||| ||||| |||| ||||| |||| |||||| | Sbjct 39504404 GTGTTGGGATTGGCAAAGATGGGAAATTGTTGAA---TTGGGCAGAGCTCGACCCTGCCG 39504348 Query 79 TTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTTT 138 | | ||||||||||| || || ||||| | | | |||||| |||||||||| | Sbjct 39504347 TAAGGGTCGGAGCATGTGGGGTTAGGCTTGGGGGTCGAGTCTTGGTCACCGGGTCGGAGT 39504288 Query 139 ATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AAATAACAACAAAAAGGATGGGCAAAA 196 ||||||| || |||||| |||| | | | || |||| | |||| |||||||| Sbjct 39504287 ATCAAGGTGCACCACATCGGTTGTACATGGTGGAAATGA--------AGGAAGGGCAAAA 39504236 Query 197 TAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATG 256 | |||||| ||||| ||| |||||||| |||||||| ||||| || || || || Sbjct 39504235 CGGAAAATTGGAGAAGATCAGTGTGCCTGATGAGTTTTCTGGGTTTGTCCAGTCAGGCTG 39504176 Query 257 CTGTGTGGAGATCTGA 272 ||||||||| |||||| Sbjct 39504175 CTGTGTGGAAATCTGA 39504160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918396041696