Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7 201 2e-49 >seq7 Length=21614486 Score = 201 bits (222), Expect = 2e-49 Identities = 205/261 (79%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| | ||||||| | ||| |||| | | ||||||||||||||||||||| || Sbjct 14426207 GCTTCTTACAAGGACTATGGTCGCTTAAGCTAA-GAAAGTTTGAGGCAATAACAGGTTTG 14426149 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||| ||||| ||||| |||| | |||||| || | ||||||||| || Sbjct 14426148 TGATGCCCTTAAATGTTTGGGGCCACACGAGTGCTACATAGATGTATTCAACGAGTTTAT 14426089 Query 189 CACCTTGGCCG-GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 ||||| || || || ||||||||| | ||| | ||||| |||||||||| || Sbjct 14426088 AGCCTTGATCGACTAGCTC-AGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCA 14426031 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| ||| | |||| ||||||| ||||||||| ||| |||||||| |||||| Sbjct 14426030 TTGCAATTGTTGGTTCTCAATGAGGAATTCCTAGTAAGTGCGAGTCATCAGTTTGCGTTG 14425971 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| |||||| ||||||||| Sbjct 14425970 ATTATGTCCCTTCCCTTTGTA 14425950 Score = 159 bits (176), Expect = 7e-37 Identities = 193/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||| ||||||||| ||| | ||| | |||||||||||||||||||| || ||| Sbjct 21440177 CTTCTTCAAGGGACTATACTTGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAAGTTTGT 21440235 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||| | ||||||||| |||||| |||||| |||||| ||| | |||||||| || Sbjct 21440236 GATACTTTTAGATGTTATGGGCCACACGCGTGCTACATTGATGTATTCAACGAGTGTATA 21440295 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||| | ||| ||||||||| | | ||| | | || || ||||| | |||| Sbjct 21440296 GCCTTGGCTGACAGGCTTGGGTAATCAT-TGAAATTTCATTTTGATGAGGATAAATCATT 21440354 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||| ||| || | |||||||||| | ||||||| | ||||||| | |||||| Sbjct 21440355 GTAATTGTTGGTCCTTAACGAGGAATTCTAAGTAAGCATGAGTCATCAACTTACGTTGAC 21440414 Query 310 TACGTCCCTGCCCTTTGTA 328 || ||| || || |||||| Sbjct 21440415 TATGTCTCTACCTTTTGTA 21440433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195917568