Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq431 188 2e-45 seq5 122 3e-25 >seq431 Length=160619 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 110809 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 110868 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 110869 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 110928 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 110929 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 110988 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 110989 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 111043 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 111044 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 111101 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 111102 CCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 111161 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 111162 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 111219 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 111220 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 111278 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 111279 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 111337 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 111338 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 111379 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 139144 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 139085 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 139084 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 139025 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 139024 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 138965 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 138964 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 138910 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 138909 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 138852 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 138851 CCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 138792 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 138791 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 138734 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 138733 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 138675 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 138674 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 138616 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 138615 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 138574 >seq5 Length=39371879 Score = 122 bits (134), Expect = 3e-25 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| |||| |||||| | ||| | || |||||||||||||| ||| Sbjct 26973409 GTGATCTATCCATGACCAGAATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACT 26973468 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 |||||||| ||| || ||||||| ||||| ||| ||||||| || || | ||| | || Sbjct 26973469 GATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGAGGTGAAATGCCAATCGAACCTAGAG 26973528 Query 168 ATAGCTGGTTCTCTCCGAAA 187 |||||||||||| |||||| Sbjct 26973529 CTAGCTGGTTCTCCCCGAAA 26973548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689592717824