Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9 150 6e-34 >seq9 Length=38630433 Score = 150 bits (166), Expect = 6e-34 Identities = 112/131 (85%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||| | |||||||||| ||||| | ||||||||| |||||||||||||||| || Sbjct 21603074 ATTCATACATGTCACTAATTTGATGATAAAACATTTGGCTGCCTTAAGAGAGTCATAATT 21603015 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 |||||| || |||| || ||||||||||||||||||||||||||||| |||||| | || Sbjct 21603014 ACTCCCACCATTTATCCATGCTTGGTTGAATTTCTTCACTTTGACATTTAGAGCATTAGG 21602955 Query 512 CAGAAATCACA 522 |||||||||| Sbjct 21602954 TAGAAATCACA 21602944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192952288