Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7 383 5e-104 seq34 298 2e-78 >seq7 Length=21614486 Score = 383 bits (424), Expect = 5e-104 Identities = 397/510 (78%), Gaps = 20/510 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||| ||| ||||||| | || || || ||||| ||| |||||||||||| ||||| Sbjct 21436208 GTACTTATTTCAATTACCAAACTCATAA-AGCCCGATATTGTTATTTATTGTCATTACCT 21436150 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || ||||| |||||||||||||||| || || || ||||||||||| |||||| || Sbjct 21436149 CCTAGTGTCAAGATTGGGTAATTTGCGTGCTTGTTGTCTTCCTTGGATTTGGTAGTTATT 21436090 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| ||||||||| | ||| |||||||||||| |||| ||| | || || | Sbjct 21436089 TCTCAAGCTCCCTCTTTGAAATTGAACCCTAATTCTCCGTCACCACT----ACAAT---A 21436037 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| |||||| ||| || |||||||||||||||| |||||| ||||| ||| || | Sbjct 21436036 GGCTACTATCTTACAATTGAAAGTTGATAGGGCATAAATTTCAATGATGCATTGCTAACA 21435977 Query 241 CAAG-GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA----AGGGCG 295 ||| | ||| ||||| || |||| | |||||| || |||| || || | Sbjct 21435976 CAAAAGTTGTGCACTTCGTCAAATTATCAAGAATCATCA--GAGCAATGAGCAAAGCCTG 21435919 Query 296 T--TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 | || ||||||||||||||| || || ||| |||||| |||| | | ||| ||||| Sbjct 21435918 TATTGACCTTTTATCTAATAAATGCATCCTTTCTAGAAGTCAGGGTATGTTGCACGTATT 21435859 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | | ||| |||||| |||| |||||||| Sbjct 21435858 AGCTCTAGAATTACTACGGTTATCCGAGTAGCA-GATACCATCAAACAAACTATAACTGA 21435800 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCT 471 |||||||||||||| ||| || ||| || || | || || ||||||| |||||||||||| Sbjct 21435799 TTTAATGAGCCATTTGCAATTCCACAGTCTAAAATGGTTCATACTTACACATGCATGGCT 21435740 Query 472 TAATCTTTGAGACAAGCATATGACTACTGG 501 |||||||||||||||||||||||||||||| Sbjct 21435739 TAATCTTTGAGACAAGCATATGACTACTGG 21435710 Score = 109 bits (120), Expect = 2e-21 Identities = 116/147 (79%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 |||| | ||| ||||||||||||||||| | | ||| || |||| | | ||| |||| Sbjct 1552153 GTTTGTTGCAGGTATTAGCTCTAGAATTTCTTCAGTTGTCTGAGTAGCA-GATACCATCA 1552211 Query 397 AATAAACGAT-AACTGATTTAATGAGCCATTC-GCAGTTT--CACTGTATAGATTGCTT- 451 || |||| || |||||||||||||||||||| ||||||| || ||| | | | || Sbjct 1552212 AACAAACTATTAACTGATTTAATGAGCCATTTTGCAGTTTTTCAATGTCTGAACTAGTTC 1552271 Query 452 ATACTTAGACATGCATGGCTTAATCTT 478 ||||||| ||||||||||||||||||| Sbjct 1552272 ATACTTACACATGCATGGCTTAATCTT 1552298 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 |||||| |||||| |||| ||| || ||||| ||||||| | | ||||||||||| || Sbjct 450923 TTTATTATCACTATCTCCTCGTATCAGGATTAGGTAATTCATGAGTCTGCTGCCTTCTTT 450864 Query 105 GGATGTGGTAGCCGTTTC 122 ||||||||||||||||| Sbjct 450863 AGATGTGGTAGCCGTTTC 450846 >seq34 Length=75670 Score = 298 bits (330), Expect = 2e-78 Identities = 191/207 (92%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 67077 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 67019 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67018 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 66959 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 66958 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 66899 Query 181 GGCCACTATCCTACCATCGAAAGTTGA 207 ||||||||||||||||||||||||||| Sbjct 66898 GGCCACTATCCTACCATCGAAAGTTGA 66872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510393490176