Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq431 625 4e-174 >seq431 Length=160619 Score = 625 bits (692), Expect = 4e-174 Identities = 738/991 (74%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | |||||||| || |||| ||||| ||||| || Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||||| ||| | | | ||||| |||| || || | ||||| | ||||| | Sbjct 1504 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1447 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || ||||| |||||||| || || ||||| || |||| || || | || ||||||| Sbjct 1446 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1387 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 | || || |||||||| || | ||| | || || || ||| | ||||| ||||| | Sbjct 1386 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGA 1327 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 |||||||||| || || | ||||| ||| | ||||| || ||||||| | || | | Sbjct 1326 TCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1267 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTT 189205 | | |||||| | | || | || || | |||||||||||||||||||||| || Sbjct 1266 TTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTT 1210 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| |||||||| ||||||||| |||| || || || ||||||||||| || Sbjct 1209 TCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTG 1150 Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325 |||| || || || ||||||| | |||||||| ||| ||||| | ||||| | | Sbjct 1149 CCGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAG 1090 Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385 | ||| ||| || ||||||| |||| |||| ||||| || || ||||||||||| |||| Sbjct 1089 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGC 1030 Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445 |||| || |||||| | || || || ||||| ||||| || || || ||| || |||| Sbjct 1029 ACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 970 Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505 ||||||| | || |||||| || | | |||||||| |||| || || || Sbjct 969 ATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 910 Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565 | ||||||| || || ||||| |||||||| || || ||||| ||||||||||| |||| Sbjct 909 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 850 Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 | || || | |||||||||||||| |||||||| || ||||| | |||||||||| Sbjct 849 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCC 790 Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685 | ||||| ||||| || |||||||||||||| ||||| | || | ||||| ||||| | Sbjct 789 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTT 730 Query 189686 TCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGA 189745 ||||||| ||||| ||||| ||||| ||||| | ||||| ||||||||||||| | | Sbjct 729 TCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 670 Query 189746 ACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTA 189805 | || ||||| || || | ||||||||| |||||||||||||| |||||||| |||| Sbjct 669 ATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 610 Query 189806 ACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 | ||||| ||||||||||| || || || || Sbjct 609 ATGCTCATAACTTCCCTCTAGACCTAGCTGC 579 Score = 522 bits (578), Expect = 3e-143 Identities = 728/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || ||||| |||||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| |||| || || || ||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| || || ||| | || ||| || | || || ||| ||||| | Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCTT 34931 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 34932 AACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGG 34991 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||||||| | ||||| ||||| | ||| ||| | || || || ||| | ||||| Sbjct 34992 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGT 35051 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || |||||||| ||||||| ||||| || || ||| | ||||| |||||||| || || Sbjct 35052 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCG 35111 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | || ||||| ||||| || || ||||||||||| || |||||||||| Sbjct 35112 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 35170 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || || || || || || |||||||| |||||||||| ||||| || | Sbjct 35171 TTTCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTG 35230 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 |||| ||||| || || || ||| ||||||| || || || || ||||| ||||| ||| Sbjct 35231 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGA 35290 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | |||| | || || || | || || | Sbjct 35291 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35350 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||||| || || || |||||||| | |||||||||||| ||||| || || | Sbjct 35351 ATGGTGCTACCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 35410 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| ||||| || ||||| |||||||| || ||||| || |||| Sbjct 35411 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 35470 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||||||||| ||||| || ||||| | ||||| |||||||||||| | |||| Sbjct 35471 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35530 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 | || || | ||| | |||| | | | || | | ||||| ||||| ||||| | Sbjct 35531 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 35590 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 |||| |||||||| || ||||| || ||| | ||||| |||||||| || || ||||||| Sbjct 35591 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 35650 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | ||||| |||||||| ||||| || || ||| ||||| | ||| |||| || |||| Sbjct 35651 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35710 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || ||||| || || |||| || || || || | || | || |||||||| Sbjct 35711 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634076583894000