Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2278 398 1e-108 seq298 398 1e-108 seq717 302 7e-80 seq565 134 2e-29 seq1399 91.5 2e-16 >seq2278 Length=30574 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 22577 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 22634 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22635 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 22694 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 22695 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 22753 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 22754 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 22813 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 22814 GCCATAGTCCCTCTAA 22829 >seq298 Length=195704 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 126553 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 126496 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126495 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 126436 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 126435 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 126377 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 126376 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 126317 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 126316 GCCATAGTCCCTCTAA 126301 Score = 358 bits (396), Expect = 1e-96 Identities = 236/256 (92%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| | Sbjct 136343 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTGACTAAGAATT-C 136286 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 136285 CTCGTTGAAGACCAACAATTGCAATGATCGATCCCCATCATGATGAAATTTCAAAGATTA 136226 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| | |||||||||||||| | |||| ||||||||||||||||||||||| ||||| Sbjct 136225 CCCGGGCATGTCGGCCAAGGTGTGA-ACTCATTGAATACATCAGTGTAGCGCGCATGCGG 136167 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| | Sbjct 136166 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAGCTTACTTGGCCTAAACG 136107 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 136106 GCCATAGTCCCTCTAA 136091 Score = 354 bits (392), Expect = 1e-95 Identities = 228/245 (93%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | Sbjct 114614 GTACAAAGGGCAGGGACGTAGTCAACGTGAGCT-GATGACTCATGCTTACTAGGAATT-C 114557 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 114556 CTCGTTGAAGACCAACAATTGCAATGATCTATCCACATCACGATGAAATTTCAAAGATTA 114497 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||||| | |||||||||||||||||||||||||||| | | | Sbjct 114496 CCCGGGCCTATCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCATACAG 114438 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 114437 CCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 114378 Query 241 GCCAT 245 ||||| Sbjct 114377 GCCAT 114373 Score = 354 bits (392), Expect = 1e-95 Identities = 235/254 (93%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 138137 ACAAAGGACAGGGACATAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCT 138080 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 122 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 138079 CGTTGAAGACCAACAATTGCAAT-ATCTATCCCCATCACGATGAAATTTCAAAGATTACT 138021 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 || |||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 138020 TGGGCCTGTCGGCCAAGGTG-TAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 137962 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242 |||||||||||||| |||||||||||||||||| |||| ||||||| || |||||| ||| Sbjct 137961 CAGAACATCTAAGGACATCACAGACCTGTTATTACCTCGAACTTCCTTGACCTAAACGGC 137902 Query 243 CAT-CTCCCTCGAA 255 ||| |||||| || Sbjct 137901 CATAGTCCCTCTAA 137888 >seq717 Length=192076 Score = 302 bits (334), Expect = 7e-80 Identities = 221/256 (86%), Gaps = 17/256 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| || |||||||||||||||| ||||| ||||| Sbjct 161100 GTACAAAGGGCAGCGATGTAGTCAACGCGAGCT-GATGATG--------------ATTTC 161144 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161145 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 161204 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | |||||||| ||||||||||| | ||||||||||||||||||||| ||||| |||||| Sbjct 161205 CTCGGACCTGACGGCCAAGGTG-TGAACTCGTTGAATACATCAGTGTTGCGCGTGTGCGG 161263 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| | |||| ||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 161264 CCCATAGCATCAAAGGGCATCACAGACCTGTTATTACCTCAAACTTCCTTGGCCTAAACG 161323 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 161324 GCCATAGTCCCTCTAA 161339 >seq565 Length=200466 Score = 134 bits (148), Expect = 2e-29 Identities = 95/106 (90%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||| |||||||||||| |||||||| | ||| ||| |||| | Sbjct 134082 GTACAAAGGGCAGAGACGTAATCAACGCGAGCT-GATGACTCCCACTTTTTAGAAATT-C 134139 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGA 106 ||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 134140 CTCGTTGAAGACCAACAATTGCAATGATCTATCTCCATCATGATGA 134185 >seq1399 Length=54372 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCA 137 ||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||| Sbjct 23392 ATTGCAATGATCTATCCCCATCACGATAAAAGTTCAAAGATTACTCGGGCCTGTCGGCCA 23451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751950695120